Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
MSX2P35548 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC18.91■□□□□ 0.62
MSX2P35548 AC079140.4-201ENST00000507448 529 ntBASIC18.91■□□□□ 0.62
MSX2P35548 AC027682.1-201ENST00000562846 899 ntBASIC18.91■□□□□ 0.62
MSX2P35548 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC18.91■□□□□ 0.62
MSX2P35548 GRAMD4P4-201ENST00000613563 1115 ntBASIC18.91■□□□□ 0.62
MSX2P35548 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
MSX2P35548 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC18.91■□□□□ 0.62
MSX2P35548 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
MSX2P35548 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
MSX2P35548 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC18.91■□□□□ 0.62
MSX2P35548 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
MSX2P35548 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC18.9■□□□□ 0.62
MSX2P35548 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
MSX2P35548 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
MSX2P35548 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
MSX2P35548 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
MSX2P35548 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
MSX2P35548 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
MSX2P35548 NT5C3AP1-201ENST00000394500 1012 ntBASIC18.9■□□□□ 0.62
MSX2P35548 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC18.9■□□□□ 0.62
MSX2P35548 AC120498.10-201ENST00000621827 505 ntBASIC18.9■□□□□ 0.62
MSX2P35548 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
MSX2P35548 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
MSX2P35548 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
MSX2P35548 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC18.9■□□□□ 0.62
MSX2P35548 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
MSX2P35548 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
MSX2P35548 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
MSX2P35548 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
MSX2P35548 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
MSX2P35548 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC18.9■□□□□ 0.62
MSX2P35548 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC18.9■□□□□ 0.62
MSX2P35548 LINC01465-201ENST00000408887 1940 ntBASIC18.9■□□□□ 0.62
MSX2P35548 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC18.9■□□□□ 0.62
MSX2P35548 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
MSX2P35548 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
MSX2P35548 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.62
MSX2P35548 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
MSX2P35548 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
MSX2P35548 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
MSX2P35548 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC18.89■□□□□ 0.61
MSX2P35548 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
MSX2P35548 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC18.89■□□□□ 0.61
MSX2P35548 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
MSX2P35548 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
MSX2P35548 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC18.89■□□□□ 0.61
MSX2P35548 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC18.89■□□□□ 0.61
MSX2P35548 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
MSX2P35548 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
MSX2P35548 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC18.89■□□□□ 0.61
MSX2P35548 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
MSX2P35548 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
MSX2P35548 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
MSX2P35548 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC18.89■□□□□ 0.61
MSX2P35548 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
MSX2P35548 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
MSX2P35548 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
MSX2P35548 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC18.89■□□□□ 0.61
MSX2P35548 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
MSX2P35548 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
MSX2P35548 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
MSX2P35548 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC18.88■□□□□ 0.61
MSX2P35548 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC18.88■□□□□ 0.61
MSX2P35548 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
MSX2P35548 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
MSX2P35548 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
MSX2P35548 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
MSX2P35548 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC18.88■□□□□ 0.61
MSX2P35548 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC18.88■□□□□ 0.61
MSX2P35548 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
MSX2P35548 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
MSX2P35548 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
MSX2P35548 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
MSX2P35548 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
MSX2P35548 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC18.88■□□□□ 0.61
MSX2P35548 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
MSX2P35548 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
MSX2P35548 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
MSX2P35548 AIRN-201ENST00000601203 4374 ntBASIC18.88■□□□□ 0.61
MSX2P35548 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
MSX2P35548 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
MSX2P35548 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
MSX2P35548 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
MSX2P35548 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
MSX2P35548 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
MSX2P35548 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
MSX2P35548 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
MSX2P35548 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
MSX2P35548 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
MSX2P35548 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC18.87■□□□□ 0.61
MSX2P35548 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC18.87■□□□□ 0.61
MSX2P35548 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC18.87■□□□□ 0.61
MSX2P35548 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
MSX2P35548 AP001330.3-201ENST00000520123 633 ntBASIC18.87■□□□□ 0.61
MSX2P35548 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
MSX2P35548 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC18.87■□□□□ 0.61
MSX2P35548 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC18.87■□□□□ 0.61
MSX2P35548 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC18.87■□□□□ 0.61
MSX2P35548 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 57.1 ms