Protein–RNA interactions for Protein: P35398

RORA, Nuclear receptor ROR-alpha, humanhuman

Predictions only

Length 523 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RORAP35398 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
RORAP35398 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
RORAP35398 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC18.86■□□□□ 0.61
RORAP35398 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC18.86■□□□□ 0.61
RORAP35398 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
RORAP35398 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RORAP35398 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RORAP35398 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RORAP35398 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
RORAP35398 KRT8P17-201ENST00000453110 1448 ntBASIC18.85■□□□□ 0.61
RORAP35398 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RORAP35398 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
RORAP35398 KRT16P5-201ENST00000455284 522 ntBASIC18.85■□□□□ 0.61
RORAP35398 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
RORAP35398 F2R-202ENST00000505600 442 ntTSL 2 BASIC18.85■□□□□ 0.61
RORAP35398 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC18.85■□□□□ 0.61
RORAP35398 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC18.85■□□□□ 0.61
RORAP35398 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC18.85■□□□□ 0.61
RORAP35398 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
RORAP35398 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC18.85■□□□□ 0.61
RORAP35398 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
RORAP35398 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC18.85■□□□□ 0.61
RORAP35398 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC18.85■□□□□ 0.61
RORAP35398 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
RORAP35398 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC18.85■□□□□ 0.61
RORAP35398 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
RORAP35398 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC18.84■□□□□ 0.61
RORAP35398 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
RORAP35398 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
RORAP35398 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC18.84■□□□□ 0.61
RORAP35398 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
RORAP35398 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC18.84■□□□□ 0.61
RORAP35398 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC18.84■□□□□ 0.61
RORAP35398 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC18.84■□□□□ 0.61
RORAP35398 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
RORAP35398 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC18.84■□□□□ 0.61
RORAP35398 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC18.84■□□□□ 0.61
RORAP35398 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
RORAP35398 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
RORAP35398 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC18.84■□□□□ 0.61
RORAP35398 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
RORAP35398 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
RORAP35398 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
RORAP35398 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC18.84■□□□□ 0.61
RORAP35398 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC18.84■□□□□ 0.61
RORAP35398 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC18.84■□□□□ 0.61
RORAP35398 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC18.84■□□□□ 0.61
RORAP35398 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC18.84■□□□□ 0.61
RORAP35398 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC18.84■□□□□ 0.61
RORAP35398 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
RORAP35398 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
RORAP35398 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
RORAP35398 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
RORAP35398 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC18.84■□□□□ 0.61
RORAP35398 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
RORAP35398 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
RORAP35398 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC18.83■□□□□ 0.61
RORAP35398 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
RORAP35398 AC092720.2-201ENST00000602388 1665 ntBASIC18.83■□□□□ 0.61
RORAP35398 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
RORAP35398 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
RORAP35398 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
RORAP35398 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
RORAP35398 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC18.83■□□□□ 0.6
RORAP35398 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
RORAP35398 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC18.83■□□□□ 0.6
RORAP35398 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC18.83■□□□□ 0.6
RORAP35398 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
RORAP35398 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC18.83■□□□□ 0.6
RORAP35398 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
RORAP35398 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
RORAP35398 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC18.83■□□□□ 0.6
RORAP35398 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
RORAP35398 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
RORAP35398 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
RORAP35398 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
RORAP35398 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
RORAP35398 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
RORAP35398 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
RORAP35398 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
RORAP35398 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
RORAP35398 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC18.82■□□□□ 0.6
RORAP35398 KRT17P2-201ENST00000300992 1314 ntBASIC18.82■□□□□ 0.6
RORAP35398 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
RORAP35398 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
RORAP35398 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
RORAP35398 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
RORAP35398 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
RORAP35398 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC18.82■□□□□ 0.6
RORAP35398 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
RORAP35398 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
RORAP35398 GXYLT1P3-201ENST00000453058 1193 ntBASIC18.82■□□□□ 0.6
RORAP35398 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
RORAP35398 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC18.82■□□□□ 0.6
RORAP35398 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
RORAP35398 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
RORAP35398 AC073912.3-201ENST00000624414 853 ntBASIC18.82■□□□□ 0.6
RORAP35398 RNF165-205ENST00000588679 2904 ntBASIC18.82■□□□□ 0.6
RORAP35398 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
RORAP35398 DPP3P2-201ENST00000416030 1696 ntBASIC18.82■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 53.9 ms