Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC19.87■□□□□ 0.77
PTPN4P29074 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC19.87■□□□□ 0.77
PTPN4P29074 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC19.87■□□□□ 0.77
PTPN4P29074 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC19.87■□□□□ 0.77
PTPN4P29074 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
PTPN4P29074 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
PTPN4P29074 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
PTPN4P29074 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC19.87■□□□□ 0.77
PTPN4P29074 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC19.87■□□□□ 0.77
PTPN4P29074 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC19.87■□□□□ 0.77
PTPN4P29074 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC19.87■□□□□ 0.77
PTPN4P29074 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
PTPN4P29074 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
PTPN4P29074 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
PTPN4P29074 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC19.86■□□□□ 0.77
PTPN4P29074 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
PTPN4P29074 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
PTPN4P29074 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
PTPN4P29074 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
PTPN4P29074 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
PTPN4P29074 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
PTPN4P29074 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC19.86■□□□□ 0.77
PTPN4P29074 TSPY20P-201ENST00000450910 630 ntBASIC19.86■□□□□ 0.77
PTPN4P29074 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC19.86■□□□□ 0.77
PTPN4P29074 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC19.86■□□□□ 0.77
PTPN4P29074 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC19.86■□□□□ 0.77
PTPN4P29074 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
PTPN4P29074 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
PTPN4P29074 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC19.86■□□□□ 0.77
PTPN4P29074 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
PTPN4P29074 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC19.86■□□□□ 0.77
PTPN4P29074 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
PTPN4P29074 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
PTPN4P29074 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
PTPN4P29074 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
PTPN4P29074 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC19.85■□□□□ 0.77
PTPN4P29074 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
PTPN4P29074 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
PTPN4P29074 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
PTPN4P29074 AC008694.1-202ENST00000636953 945 ntBASIC19.85■□□□□ 0.77
PTPN4P29074 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
PTPN4P29074 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
PTPN4P29074 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC19.85■□□□□ 0.77
PTPN4P29074 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
PTPN4P29074 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
PTPN4P29074 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
PTPN4P29074 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
PTPN4P29074 NEFHP1-201ENST00000412845 2629 ntBASIC19.85■□□□□ 0.77
PTPN4P29074 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
PTPN4P29074 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
PTPN4P29074 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
PTPN4P29074 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
PTPN4P29074 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC19.84■□□□□ 0.77
PTPN4P29074 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
PTPN4P29074 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC19.84■□□□□ 0.77
PTPN4P29074 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
PTPN4P29074 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC19.84■□□□□ 0.77
PTPN4P29074 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC19.84■□□□□ 0.77
PTPN4P29074 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
PTPN4P29074 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
PTPN4P29074 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
PTPN4P29074 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
PTPN4P29074 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC19.84■□□□□ 0.77
PTPN4P29074 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC19.84■□□□□ 0.77
PTPN4P29074 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
PTPN4P29074 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
PTPN4P29074 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
PTPN4P29074 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
PTPN4P29074 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
PTPN4P29074 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC19.84■□□□□ 0.77
PTPN4P29074 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC19.84■□□□□ 0.77
PTPN4P29074 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC19.84■□□□□ 0.77
PTPN4P29074 MIR4758-201ENST00000577688 71 ntBASIC19.84■□□□□ 0.77
PTPN4P29074 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC19.84■□□□□ 0.77
PTPN4P29074 OR10C1-204ENST00000622521 1039 ntBASIC19.84■□□□□ 0.77
PTPN4P29074 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
PTPN4P29074 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
PTPN4P29074 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
PTPN4P29074 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
PTPN4P29074 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
PTPN4P29074 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
PTPN4P29074 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC19.84■□□□□ 0.77
PTPN4P29074 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC19.84■□□□□ 0.77
PTPN4P29074 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC19.84■□□□□ 0.77
PTPN4P29074 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC19.84■□□□□ 0.77
PTPN4P29074 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.77
PTPN4P29074 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
PTPN4P29074 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC19.83■□□□□ 0.77
PTPN4P29074 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC19.83■□□□□ 0.77
PTPN4P29074 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC19.83■□□□□ 0.77
PTPN4P29074 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
PTPN4P29074 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
PTPN4P29074 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC19.83■□□□□ 0.77
PTPN4P29074 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC19.83■□□□□ 0.77
PTPN4P29074 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
PTPN4P29074 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC19.83■□□□□ 0.77
PTPN4P29074 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.77
PTPN4P29074 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC19.83■□□□□ 0.77
PTPN4P29074 AC069236.1-201ENST00000604339 616 ntBASIC19.83■□□□□ 0.77
PTPN4P29074 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms