Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC24.43■■□□□ 1.5
COL4A1P02462 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC24.43■■□□□ 1.5
COL4A1P02462 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
COL4A1P02462 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
COL4A1P02462 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC24.43■■□□□ 1.5
COL4A1P02462 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
COL4A1P02462 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC24.43■■□□□ 1.5
COL4A1P02462 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC24.43■■□□□ 1.5
COL4A1P02462 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC24.43■■□□□ 1.5
COL4A1P02462 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
COL4A1P02462 AC004980.1-204ENST00000429707 299 ntBASIC24.43■■□□□ 1.5
COL4A1P02462 KRT18P16-201ENST00000510337 1294 ntBASIC24.43■■□□□ 1.5
COL4A1P02462 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC24.43■■□□□ 1.5
COL4A1P02462 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
COL4A1P02462 LINC01568-207ENST00000641790 1380 ntBASIC24.42■■□□□ 1.5
COL4A1P02462 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC24.42■■□□□ 1.5
COL4A1P02462 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC24.42■■□□□ 1.5
COL4A1P02462 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
COL4A1P02462 INGX-201ENST00000359239 846 ntBASIC24.42■■□□□ 1.5
COL4A1P02462 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC24.42■■□□□ 1.5
COL4A1P02462 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC24.42■■□□□ 1.5
COL4A1P02462 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC24.42■■□□□ 1.5
COL4A1P02462 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
COL4A1P02462 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
COL4A1P02462 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
COL4A1P02462 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
COL4A1P02462 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC24.41■■□□□ 1.5
COL4A1P02462 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC24.41■■□□□ 1.5
COL4A1P02462 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC24.41■■□□□ 1.5
COL4A1P02462 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC24.41■■□□□ 1.5
COL4A1P02462 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC24.41■■□□□ 1.5
COL4A1P02462 AC010203.1-204ENST00000548782 407 ntBASIC24.41■■□□□ 1.5
COL4A1P02462 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC24.41■■□□□ 1.5
COL4A1P02462 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC24.41■■□□□ 1.5
COL4A1P02462 AC026271.3-201ENST00000571884 352 ntBASIC24.41■■□□□ 1.5
COL4A1P02462 AL445675.2-201ENST00000620291 557 ntBASIC24.41■■□□□ 1.5
COL4A1P02462 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
COL4A1P02462 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
COL4A1P02462 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC24.41■■□□□ 1.5
COL4A1P02462 AC079834.2-201ENST00000609776 1949 ntBASIC24.41■■□□□ 1.5
COL4A1P02462 AP006587.1-201ENST00000534129 1502 ntBASIC24.41■■□□□ 1.5
COL4A1P02462 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC24.4■■□□□ 1.5
COL4A1P02462 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC24.4■■□□□ 1.5
COL4A1P02462 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC24.4■■□□□ 1.5
COL4A1P02462 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC24.4■■□□□ 1.5
COL4A1P02462 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC24.4■■□□□ 1.5
COL4A1P02462 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
COL4A1P02462 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC24.4■■□□□ 1.5
COL4A1P02462 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
COL4A1P02462 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC24.4■■□□□ 1.5
COL4A1P02462 GOLGA6L3-201ENST00000507199 1679 ntBASIC24.4■■□□□ 1.5
COL4A1P02462 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC24.4■■□□□ 1.5
COL4A1P02462 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC24.4■■□□□ 1.5
COL4A1P02462 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
COL4A1P02462 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC24.4■■□□□ 1.5
COL4A1P02462 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC24.4■■□□□ 1.5
COL4A1P02462 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC24.39■■□□□ 1.5
COL4A1P02462 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC24.39■■□□□ 1.5
COL4A1P02462 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC24.39■■□□□ 1.5
COL4A1P02462 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC24.39■■□□□ 1.5
COL4A1P02462 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
COL4A1P02462 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC24.39■■□□□ 1.5
COL4A1P02462 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
COL4A1P02462 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC24.39■■□□□ 1.49
COL4A1P02462 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
COL4A1P02462 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
COL4A1P02462 FDX2-206ENST00000492239 773 ntTSL 2 BASIC24.39■■□□□ 1.49
COL4A1P02462 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC24.39■■□□□ 1.49
COL4A1P02462 AC092720.2-201ENST00000602388 1665 ntBASIC24.39■■□□□ 1.49
COL4A1P02462 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
COL4A1P02462 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC24.39■■□□□ 1.49
COL4A1P02462 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC24.39■■□□□ 1.49
COL4A1P02462 PHGDH-210ENST00000641115 1638 ntBASIC24.39■■□□□ 1.49
COL4A1P02462 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC24.38■■□□□ 1.49
COL4A1P02462 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
COL4A1P02462 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
COL4A1P02462 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
COL4A1P02462 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
COL4A1P02462 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
COL4A1P02462 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC24.38■■□□□ 1.49
COL4A1P02462 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC24.38■■□□□ 1.49
COL4A1P02462 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC24.38■■□□□ 1.49
COL4A1P02462 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC24.38■■□□□ 1.49
COL4A1P02462 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC24.38■■□□□ 1.49
COL4A1P02462 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
COL4A1P02462 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC24.38■■□□□ 1.49
COL4A1P02462 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC24.38■■□□□ 1.49
COL4A1P02462 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
COL4A1P02462 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
COL4A1P02462 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC24.38■■□□□ 1.49
COL4A1P02462 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
COL4A1P02462 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
COL4A1P02462 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC24.38■■□□□ 1.49
COL4A1P02462 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC24.38■■□□□ 1.49
COL4A1P02462 CFL2-205ENST00000555765 632 ntTSL 2 BASIC24.37■■□□□ 1.49
COL4A1P02462 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC24.37■■□□□ 1.49
COL4A1P02462 AC006011.2-201ENST00000621313 1158 ntBASIC24.37■■□□□ 1.49
COL4A1P02462 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC24.37■■□□□ 1.49
COL4A1P02462 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC24.37■■□□□ 1.49
COL4A1P02462 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC24.37■■□□□ 1.49
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms