Protein–RNA interactions for Protein: P00558

PGK1, Phosphoglycerate kinase 1, humanhuman

Predictions only

Length 417 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PGK1P00558 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC22.17■■□□□ 1.14
PGK1P00558 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC22.17■■□□□ 1.14
PGK1P00558 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC22.17■■□□□ 1.14
PGK1P00558 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC22.17■■□□□ 1.14
PGK1P00558 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC22.16■■□□□ 1.14
PGK1P00558 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC22.16■■□□□ 1.14
PGK1P00558 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
PGK1P00558 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC22.16■■□□□ 1.14
PGK1P00558 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
PGK1P00558 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
PGK1P00558 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
PGK1P00558 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
PGK1P00558 TSPY14P-201ENST00000303979 915 ntBASIC22.16■■□□□ 1.14
PGK1P00558 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC22.16■■□□□ 1.14
PGK1P00558 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
PGK1P00558 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
PGK1P00558 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
PGK1P00558 PLK5-205ENST00000642079 1969 ntBASIC22.16■■□□□ 1.14
PGK1P00558 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC22.15■■□□□ 1.14
PGK1P00558 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC22.15■■□□□ 1.14
PGK1P00558 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
PGK1P00558 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
PGK1P00558 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC22.15■■□□□ 1.14
PGK1P00558 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
PGK1P00558 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC22.15■■□□□ 1.14
PGK1P00558 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC22.15■■□□□ 1.14
PGK1P00558 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC22.15■■□□□ 1.14
PGK1P00558 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
PGK1P00558 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC22.15■■□□□ 1.14
PGK1P00558 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC22.15■■□□□ 1.14
PGK1P00558 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC22.15■■□□□ 1.14
PGK1P00558 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
PGK1P00558 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC22.15■■□□□ 1.14
PGK1P00558 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
PGK1P00558 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC22.15■■□□□ 1.14
PGK1P00558 STK25-234ENST00000535007 2459 ntTSL 2 BASIC22.15■■□□□ 1.14
PGK1P00558 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC22.14■■□□□ 1.14
PGK1P00558 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC22.14■■□□□ 1.14
PGK1P00558 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC22.14■■□□□ 1.14
PGK1P00558 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC22.14■■□□□ 1.13
PGK1P00558 AC005229.4-201ENST00000610085 2198 ntBASIC22.14■■□□□ 1.13
PGK1P00558 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
PGK1P00558 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
PGK1P00558 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC22.14■■□□□ 1.13
PGK1P00558 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC22.14■■□□□ 1.13
PGK1P00558 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC22.14■■□□□ 1.13
PGK1P00558 GUK1-204ENST00000366721 689 ntTSL 3 BASIC22.14■■□□□ 1.13
PGK1P00558 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
PGK1P00558 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC22.14■■□□□ 1.13
PGK1P00558 AC004980.1-204ENST00000429707 299 ntBASIC22.14■■□□□ 1.13
PGK1P00558 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
PGK1P00558 FDX2-206ENST00000492239 773 ntTSL 2 BASIC22.14■■□□□ 1.13
PGK1P00558 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC22.14■■□□□ 1.13
PGK1P00558 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC22.14■■□□□ 1.13
PGK1P00558 DGCR10-201ENST00000609839 495 ntBASIC22.14■■□□□ 1.13
PGK1P00558 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC22.14■■□□□ 1.13
PGK1P00558 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC22.14■■□□□ 1.13
PGK1P00558 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
PGK1P00558 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
PGK1P00558 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC22.14■■□□□ 1.13
PGK1P00558 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC22.14■■□□□ 1.13
PGK1P00558 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
PGK1P00558 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
PGK1P00558 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
PGK1P00558 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
PGK1P00558 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC22.14■■□□□ 1.13
PGK1P00558 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC22.13■■□□□ 1.13
PGK1P00558 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
PGK1P00558 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
PGK1P00558 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
PGK1P00558 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC22.13■■□□□ 1.13
PGK1P00558 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
PGK1P00558 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC22.13■■□□□ 1.13
PGK1P00558 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC22.13■■□□□ 1.13
PGK1P00558 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
PGK1P00558 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC22.13■■□□□ 1.13
PGK1P00558 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
PGK1P00558 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC22.13■■□□□ 1.13
PGK1P00558 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
PGK1P00558 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
PGK1P00558 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC22.12■■□□□ 1.13
PGK1P00558 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
PGK1P00558 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
PGK1P00558 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC22.12■■□□□ 1.13
PGK1P00558 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
PGK1P00558 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC22.12■■□□□ 1.13
PGK1P00558 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC22.12■■□□□ 1.13
PGK1P00558 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC22.12■■□□□ 1.13
PGK1P00558 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC22.12■■□□□ 1.13
PGK1P00558 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
PGK1P00558 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC22.12■■□□□ 1.13
PGK1P00558 LTBR-211ENST00000543190 785 ntTSL 3 BASIC22.12■■□□□ 1.13
PGK1P00558 USF2-205ENST00000594064 1179 ntTSL 2 BASIC22.12■■□□□ 1.13
PGK1P00558 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC22.12■■□□□ 1.13
PGK1P00558 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC22.12■■□□□ 1.13
PGK1P00558 FAM87A-204ENST00000613235 858 ntBASIC22.12■■□□□ 1.13
PGK1P00558 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC22.12■■□□□ 1.13
PGK1P00558 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC22.12■■□□□ 1.13
PGK1P00558 AC116351.2-201ENST00000606540 1585 ntBASIC22.12■■□□□ 1.13
PGK1P00558 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 75.8 ms