Protein–RNA interactions for Protein: O94913

PCF11, Pre-mRNA cleavage complex 2 protein Pcf11, humanhuman

Known RBP Predictions only

Length 1,555 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11O94913 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC31.11■■■□□ 2.57
PCF11O94913 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC31.11■■■□□ 2.57
PCF11O94913 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC31.11■■■□□ 2.57
PCF11O94913 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
PCF11O94913 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC31.11■■■□□ 2.57
PCF11O94913 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
PCF11O94913 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC31.11■■■□□ 2.57
PCF11O94913 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC31.11■■■□□ 2.57
PCF11O94913 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC31.11■■■□□ 2.57
PCF11O94913 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC31.11■■■□□ 2.57
PCF11O94913 AL445675.2-201ENST00000620291 557 ntBASIC31.11■■■□□ 2.57
PCF11O94913 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC31.11■■■□□ 2.57
PCF11O94913 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
PCF11O94913 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC31.11■■■□□ 2.57
PCF11O94913 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC31.11■■■□□ 2.57
PCF11O94913 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC31.1■■■□□ 2.57
PCF11O94913 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC31.1■■■□□ 2.57
PCF11O94913 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC31.1■■■□□ 2.57
PCF11O94913 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
PCF11O94913 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC31.1■■■□□ 2.57
PCF11O94913 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
PCF11O94913 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC31.09■■■□□ 2.57
PCF11O94913 CRAT-202ENST00000393384 973 ntTSL 2 BASIC31.09■■■□□ 2.57
PCF11O94913 NME3-204ENST00000563498 920 ntTSL 2 BASIC31.09■■■□□ 2.57
PCF11O94913 P4HB-223ENST00000576390 439 ntTSL 4 BASIC31.09■■■□□ 2.57
PCF11O94913 CR392000.1-201ENST00000624770 1228 ntBASIC31.09■■■□□ 2.57
PCF11O94913 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
PCF11O94913 GOLGA6L3-201ENST00000507199 1679 ntBASIC31.09■■■□□ 2.57
PCF11O94913 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
PCF11O94913 SMG8-203ENST00000578922 2178 ntBASIC31.09■■■□□ 2.57
PCF11O94913 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC31.09■■■□□ 2.57
PCF11O94913 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC31.09■■■□□ 2.57
PCF11O94913 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC31.09■■■□□ 2.57
PCF11O94913 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC31.09■■■□□ 2.57
PCF11O94913 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC31.09■■■□□ 2.57
PCF11O94913 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
PCF11O94913 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
PCF11O94913 MMP23A-201ENST00000234610 1017 ntBASIC31.09■■■□□ 2.57
PCF11O94913 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
PCF11O94913 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC31.09■■■□□ 2.57
PCF11O94913 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC31.09■■■□□ 2.57
PCF11O94913 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC31.09■■■□□ 2.57
PCF11O94913 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC31.09■■■□□ 2.57
PCF11O94913 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC31.09■■■□□ 2.57
PCF11O94913 STK25-204ENST00000405585 1643 ntTSL 2 BASIC31.09■■■□□ 2.57
PCF11O94913 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
PCF11O94913 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
PCF11O94913 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
PCF11O94913 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
PCF11O94913 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
PCF11O94913 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC31.08■■■□□ 2.57
PCF11O94913 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC31.08■■■□□ 2.57
PCF11O94913 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC31.08■■■□□ 2.57
PCF11O94913 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
PCF11O94913 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC31.08■■■□□ 2.57
PCF11O94913 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC31.08■■■□□ 2.57
PCF11O94913 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC31.07■■■□□ 2.57
PCF11O94913 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC31.07■■■□□ 2.56
PCF11O94913 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC31.07■■■□□ 2.56
PCF11O94913 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
PCF11O94913 MIR1238-201ENST00000408483 83 ntBASIC31.07■■■□□ 2.56
PCF11O94913 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC31.07■■■□□ 2.56
PCF11O94913 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC31.07■■■□□ 2.56
PCF11O94913 DUT-205ENST00000558813 769 ntTSL 2 BASIC31.07■■■□□ 2.56
PCF11O94913 RBM42-202ENST00000586618 771 ntTSL 3 BASIC31.07■■■□□ 2.56
PCF11O94913 GLDC-219ENST00000640208 420 ntTSL 2 BASIC31.07■■■□□ 2.56
PCF11O94913 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC31.07■■■□□ 2.56
PCF11O94913 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
PCF11O94913 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC31.07■■■□□ 2.56
PCF11O94913 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
PCF11O94913 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC31.07■■■□□ 2.56
PCF11O94913 KRT16P6-202ENST00000425692 1426 ntBASIC31.07■■■□□ 2.56
PCF11O94913 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
PCF11O94913 CYP2D8P-201ENST00000433633 1490 ntBASIC31.06■■■□□ 2.56
PCF11O94913 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC31.06■■■□□ 2.56
PCF11O94913 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC31.06■■■□□ 2.56
PCF11O94913 PPP1R14BP5-201ENST00000440334 435 ntBASIC31.06■■■□□ 2.56
PCF11O94913 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC31.06■■■□□ 2.56
PCF11O94913 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC31.06■■■□□ 2.56
PCF11O94913 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC31.06■■■□□ 2.56
PCF11O94913 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
PCF11O94913 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
PCF11O94913 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC31.06■■■□□ 2.56
PCF11O94913 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
PCF11O94913 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC31.06■■■□□ 2.56
PCF11O94913 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC31.05■■■□□ 2.56
PCF11O94913 AC113347.1-201ENST00000413321 391 ntBASIC31.05■■■□□ 2.56
PCF11O94913 AC004980.1-204ENST00000429707 299 ntBASIC31.05■■■□□ 2.56
PCF11O94913 B3GAT3P1-201ENST00000471720 806 ntBASIC31.05■■■□□ 2.56
PCF11O94913 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC31.05■■■□□ 2.56
PCF11O94913 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC31.05■■■□□ 2.56
PCF11O94913 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC31.05■■■□□ 2.56
PCF11O94913 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC31.05■■■□□ 2.56
PCF11O94913 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC31.05■■■□□ 2.56
PCF11O94913 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC31.05■■■□□ 2.56
PCF11O94913 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC31.05■■■□□ 2.56
PCF11O94913 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC31.05■■■□□ 2.56
PCF11O94913 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
PCF11O94913 FITM1-202ENST00000559294 800 ntBASIC31.05■■■□□ 2.56
PCF11O94913 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC31.05■■■□□ 2.56
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms