Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AC022483.1-201ENST00000514020 567 ntBASIC7.68□□□□□ -1.18
MSX1P28360 SCARNA20.3-201ENST00000516913 131 ntBASIC7.68□□□□□ -1.18
MSX1P28360 RN7SKP197-201ENST00000517077 297 ntBASIC7.68□□□□□ -1.18
MSX1P28360 AP000426.1-201ENST00000518749 361 ntTSL 3 BASIC7.68□□□□□ -1.18
MSX1P28360 AC025434.1-201ENST00000520705 460 ntTSL 3 BASIC7.68□□□□□ -1.18
MSX1P28360 SKP1-210ENST00000522855 802 ntAPPRIS P4 TSL 2 BASIC7.68□□□□□ -1.18
MSX1P28360 AL353699.1-201ENST00000529078 365 ntTSL 3 BASIC7.68□□□□□ -1.18
MSX1P28360 ST3GAL4-219ENST00000534457 987 ntTSL 1 (best) BASIC7.68□□□□□ -1.18
MSX1P28360 AC090826.1-203ENST00000569235 490 ntBASIC7.68□□□□□ -1.18
MSX1P28360 MIR4450-201ENST00000583589 65 ntBASIC7.68□□□□□ -1.18
MSX1P28360 AC138761.2-201ENST00000583878 343 ntBASIC7.68□□□□□ -1.18
MSX1P28360 UBE2V2P2-201ENST00000587677 504 ntBASIC7.68□□□□□ -1.18
MSX1P28360 AC005498.1-201ENST00000592125 465 ntBASIC7.68□□□□□ -1.18
MSX1P28360 AC009220.3-201ENST00000604318 586 ntBASIC7.68□□□□□ -1.18
MSX1P28360 TATDN1-220ENST00000605953 726 ntTSL 2 BASIC7.68□□□□□ -1.18
MSX1P28360 AC055764.2-201ENST00000610089 670 ntBASIC7.68□□□□□ -1.18
MSX1P28360 AC106028.5-201ENST00000610332 395 ntBASIC7.68□□□□□ -1.18
MSX1P28360 AC087633.2-208ENST00000612877 502 ntTSL 5 BASIC7.68□□□□□ -1.18
MSX1P28360 ZNF248-209ENST00000615949 518 ntTSL 5 BASIC7.68□□□□□ -1.18
MSX1P28360 ZNHIT3-204ENST00000617429 951 ntAPPRIS P1 TSL 1 (best) BASIC7.68□□□□□ -1.18
MSX1P28360 AL354810.1-201ENST00000618134 635 ntTSL 3 BASIC7.68□□□□□ -1.18
MSX1P28360 CU634019.6-201ENST00000623165 710 ntTSL 5 BASIC7.68□□□□□ -1.18
MSX1P28360 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC7.68□□□□□ -1.18
MSX1P28360 MFSD8-245ENST00000641743 948 ntBASIC7.68□□□□□ -1.18
MSX1P28360 SMARCA1-203ENST00000371123 3948 ntAPPRIS ALT2 TSL 1 (best) BASIC7.68□□□□□ -1.18
MSX1P28360 OR2T10-202ENST00000642090 3519 ntAPPRIS P1 BASIC7.68□□□□□ -1.18
MSX1P28360 AC002540.1-201ENST00000625023 1349 ntBASIC7.68□□□□□ -1.18
MSX1P28360 OSGEPL1-204ENST00000519810 2216 ntTSL 2 BASIC7.68□□□□□ -1.18
MSX1P28360 IST1-226ENST00000606369 3583 ntTSL 2 BASIC7.68□□□□□ -1.18
MSX1P28360 ZNF350-201ENST00000243644 2338 ntAPPRIS P1 TSL 1 (best) BASIC7.68□□□□□ -1.18
MSX1P28360 MTCO1P18-201ENST00000455518 1419 ntBASIC7.68□□□□□ -1.18
MSX1P28360 SEC62-207ENST00000480708 1430 ntAPPRIS P1 TSL 1 (best) BASIC7.68□□□□□ -1.18
MSX1P28360 IRAK4-214ENST00000613694 4280 ntAPPRIS P1 TSL 1 (best) BASIC7.68□□□□□ -1.18
MSX1P28360 ZNF546-207ENST00000600094 3426 ntAPPRIS ALT2 TSL 2 BASIC7.68□□□□□ -1.18
MSX1P28360 CBLB-205ENST00000407712 1493 ntTSL 2 BASIC7.68□□□□□ -1.18
MSX1P28360 SOX6-202ENST00000396356 8865 ntAPPRIS P3 TSL 1 (best) BASIC7.68□□□□□ -1.18
MSX1P28360 TAF1A-201ENST00000350027 1966 ntAPPRIS P1 TSL 2 BASIC7.68□□□□□ -1.18
MSX1P28360 CYCS-201ENST00000305786 4098 ntAPPRIS P1 TSL 1 (best) BASIC7.68□□□□□ -1.18
MSX1P28360 HELQ-201ENST00000295488 3579 ntAPPRIS P1 TSL 1 (best) BASIC7.67□□□□□ -1.18
MSX1P28360 AL359924.1-201ENST00000450451 3127 ntTSL 1 (best) BASIC7.67□□□□□ -1.18
MSX1P28360 ADGRF2-201ENST00000296862 2127 ntTSL 1 (best) BASIC7.67□□□□□ -1.18
MSX1P28360 GTF3C3-201ENST00000263956 4282 ntAPPRIS P1 TSL 1 (best) BASIC7.67□□□□□ -1.18
MSX1P28360 TMPRSS11B-201ENST00000332644 2671 ntAPPRIS P1 TSL 1 (best) BASIC7.67□□□□□ -1.18
MSX1P28360 VPS41-202ENST00000310301 5903 ntAPPRIS P1 TSL 1 (best) BASIC7.67□□□□□ -1.18
MSX1P28360 MTMR3-205ENST00000406629 3758 ntTSL 5 BASIC7.67□□□□□ -1.18
MSX1P28360 DCLRE1C-211ENST00000396817 2761 ntTSL 1 (best) BASIC7.67□□□□□ -1.18
MSX1P28360 TTC39A-212ENST00000447632 2790 ntAPPRIS ALT2 TSL 1 (best) BASIC7.67□□□□□ -1.18
MSX1P28360 PHACTR2-AS1-201ENST00000450575 1699 ntTSL 5 BASIC7.67□□□□□ -1.18
MSX1P28360 CDYL2-207ENST00000570137 8159 ntAPPRIS P2 TSL 1 (best) BASIC7.67□□□□□ -1.18
MSX1P28360 HIPK1-208ENST00000426820 4112 ntAPPRIS P1 TSL 2 BASIC7.67□□□□□ -1.18
MSX1P28360 PTBP2-201ENST00000370197 3057 ntAPPRIS ALT1 TSL 1 (best) BASIC7.67□□□□□ -1.18
MSX1P28360 PTBP2-202ENST00000370198 3054 ntAPPRIS ALT1 TSL 1 (best) BASIC7.67□□□□□ -1.18
MSX1P28360 MICAL2-202ENST00000342902 3711 ntAPPRIS ALT2 TSL 2 BASIC7.67□□□□□ -1.18
MSX1P28360 ZKSCAN5-203ENST00000451158 3111 ntAPPRIS P1 TSL 1 (best) BASIC7.67□□□□□ -1.18
MSX1P28360 CSNK2A1-201ENST00000217244 4416 ntAPPRIS P1 TSL 1 (best) BASIC7.67□□□□□ -1.18
MSX1P28360 MTTP-208ENST00000511045 3154 ntTSL 2 BASIC7.67□□□□□ -1.18
MSX1P28360 MT4-201ENST00000219162 294 ntAPPRIS P1 TSL 1 (best) BASIC7.67□□□□□ -1.18
MSX1P28360 OR4K5-201ENST00000315915 1078 ntAPPRIS P1 BASIC7.67□□□□□ -1.18
MSX1P28360 KRTAP6-2-201ENST00000334897 313 ntAPPRIS P1 BASIC7.67□□□□□ -1.18
MSX1P28360 ZBTB8OSP1-201ENST00000342688 498 ntBASIC7.67□□□□□ -1.18
MSX1P28360 IGKV6D-41-201ENST00000390271 371 ntAPPRIS P1 BASIC7.67□□□□□ -1.18
MSX1P28360 SNORD65-201ENST00000391079 73 ntBASIC7.67□□□□□ -1.18
MSX1P28360 SPRR2A-201ENST00000392653 709 ntAPPRIS P1 TSL 1 (best) BASIC7.67□□□□□ -1.18
MSX1P28360 CXADR-203ENST00000400165 603 ntTSL 1 (best) BASIC7.67□□□□□ -1.18
MSX1P28360 RPS27AP11-201ENST00000402798 447 ntBASIC7.67□□□□□ -1.18
MSX1P28360 RN7SKP285-201ENST00000410137 318 ntBASIC7.67□□□□□ -1.18
MSX1P28360 RPS20P15-201ENST00000412792 311 ntBASIC7.67□□□□□ -1.18
MSX1P28360 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC7.67□□□□□ -1.18
MSX1P28360 RPL21P32-201ENST00000419877 477 ntBASIC7.67□□□□□ -1.18
MSX1P28360 AC008758.2-201ENST00000420038 695 ntTSL 2 BASIC7.67□□□□□ -1.18
MSX1P28360 CLEC1A-203ENST00000420265 1165 ntAPPRIS ALT2 TSL 2 BASIC7.67□□□□□ -1.18
MSX1P28360 PUDPP1-201ENST00000421058 495 ntBASIC7.67□□□□□ -1.18
MSX1P28360 AL023581.1-201ENST00000423500 455 ntTSL 2 BASIC7.67□□□□□ -1.18
MSX1P28360 OR5AW1P-201ENST00000426334 1006 ntBASIC7.67□□□□□ -1.18
MSX1P28360 Z74696.1-201ENST00000428208 1123 ntBASIC7.67□□□□□ -1.18
MSX1P28360 FECHP1-201ENST00000431896 1214 ntBASIC7.67□□□□□ -1.18
MSX1P28360 AC010105.1-201ENST00000437290 385 ntTSL 5 BASIC7.67□□□□□ -1.18
MSX1P28360 DIAPH2-AS1-201ENST00000439759 971 ntTSL 3 BASIC7.67□□□□□ -1.18
MSX1P28360 Z99127.3-201ENST00000448158 395 ntBASIC7.67□□□□□ -1.18
MSX1P28360 AC079760.2-201ENST00000449361 681 ntTSL 5 BASIC7.67□□□□□ -1.18
MSX1P28360 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC7.67□□□□□ -1.18
MSX1P28360 AC098824.1-201ENST00000453565 980 ntBASIC7.67□□□□□ -1.18
MSX1P28360 AC096554.1-201ENST00000458182 529 ntTSL 5 BASIC7.67□□□□□ -1.18
MSX1P28360 RN7SL745P-201ENST00000484900 299 ntBASIC7.67□□□□□ -1.18
MSX1P28360 AC069439.1-201ENST00000494739 167 ntBASIC7.67□□□□□ -1.18
MSX1P28360 AC109445.1-201ENST00000512356 383 ntBASIC7.67□□□□□ -1.18
MSX1P28360 ARL2BPP6-201ENST00000512757 439 ntBASIC7.67□□□□□ -1.18
MSX1P28360 IGHVII-22-1-201ENST00000517888 265 ntBASIC7.67□□□□□ -1.18
MSX1P28360 IGLVI-68-201ENST00000519525 345 ntBASIC7.67□□□□□ -1.18
MSX1P28360 AC138356.2-201ENST00000521192 667 ntBASIC7.67□□□□□ -1.18
MSX1P28360 HGNC:24955-208ENST00000521585 1260 ntTSL 4 BASIC7.67□□□□□ -1.18
MSX1P28360 IGKV3-34-201ENST00000521692 293 ntBASIC7.67□□□□□ -1.18
MSX1P28360 LINC00958-202ENST00000526388 607 ntTSL 2 BASIC7.67□□□□□ -1.18
MSX1P28360 OR5AK3P-201ENST00000527486 1297 ntBASIC7.67□□□□□ -1.18
MSX1P28360 AL355075.1-201ENST00000528210 468 ntTSL 2 BASIC7.67□□□□□ -1.18
MSX1P28360 AC027804.1-201ENST00000534653 529 ntTSL 2 BASIC7.67□□□□□ -1.18
MSX1P28360 MS4A12-205ENST00000537076 1019 ntTSL 5 BASIC7.67□□□□□ -1.18
MSX1P28360 AL109628.2-201ENST00000554037 201 ntBASIC7.67□□□□□ -1.18
MSX1P28360 TIMM9-206ENST00000555593 796 ntAPPRIS P1 TSL 1 (best) BASIC7.67□□□□□ -1.18
MSX1P28360 ANKFN1-202ENST00000566473 3840 ntAPPRIS ALT2 TSL 5 BASIC7.67□□□□□ -1.18
Retrieved 100 of 98,524 protein–RNA pairs in 89.7 ms