Protein–RNA interactions for Protein: Q95604

HLA-C, HLA class I histocompatibility antigen, Cw-17 alpha chain, humanhuman

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-CQ95604 LYRM1-204ENST00000439021 1558 ntAPPRIS P1 TSL 2 BASIC8.73□□□□□ -1.01
HLA-CQ95604 CSF1R-201ENST00000286301 3989 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
HLA-CQ95604 LINC02334-201ENST00000617568 4959 ntTSL 1 (best) BASIC8.73□□□□□ -1.01
HLA-CQ95604 DNAH9-203ENST00000454412 13452 ntTSL 5 BASIC8.73□□□□□ -1.01
HLA-CQ95604 MAPK10-255ENST00000641020 2412 ntBASIC8.73□□□□□ -1.01
HLA-CQ95604 ECM2-202ENST00000375540 1606 ntTSL 2 BASIC8.73□□□□□ -1.01
HLA-CQ95604 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC8.73□□□□□ -1.01
HLA-CQ95604 UBA1-203ENST00000377351 3466 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
HLA-CQ95604 FO393415.1-201ENST00000314481 2255 ntTSL 2 BASIC8.73□□□□□ -1.01
HLA-CQ95604 PCDH15-210ENST00000395438 5806 ntAPPRIS ALT2 TSL 5 BASIC8.73□□□□□ -1.01
HLA-CQ95604 C1orf116-202ENST00000461135 3142 ntTSL 2 BASIC8.73□□□□□ -1.01
HLA-CQ95604 CLDN2-202ENST00000540876 2919 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
HLA-CQ95604 AC092375.2-201ENST00000567370 1665 ntBASIC8.73□□□□□ -1.01
HLA-CQ95604 LMX1A-201ENST00000294816 3350 ntAPPRIS P1 TSL 2 BASIC8.73□□□□□ -1.01
HLA-CQ95604 AC020658.3-201ENST00000568093 4028 ntBASIC8.73□□□□□ -1.01
HLA-CQ95604 MYL6-201ENST00000293422 664 ntAPPRIS ALT1 TSL 2 BASIC8.73□□□□□ -1.01
HLA-CQ95604 SULT1C3-201ENST00000329106 915 ntAPPRIS P1 TSL 2 BASIC8.73□□□□□ -1.01
HLA-CQ95604 ZC3H15-201ENST00000337859 2138 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
HLA-CQ95604 Y_RNA.38-201ENST00000362617 102 ntBASIC8.73□□□□□ -1.01
HLA-CQ95604 RNA5SP27-201ENST00000363839 119 ntBASIC8.73□□□□□ -1.01
HLA-CQ95604 SSX3-202ENST00000376893 800 ntTSL 2 BASIC8.73□□□□□ -1.01
HLA-CQ95604 RNA5SP18-201ENST00000390935 121 ntBASIC8.73□□□□□ -1.01
HLA-CQ95604 AC003045.1-201ENST00000398779 713 ntBASIC8.73□□□□□ -1.01
HLA-CQ95604 RPL10P10-201ENST00000403509 664 ntBASIC8.73□□□□□ -1.01
HLA-CQ95604 MTIF3-203ENST00000405591 889 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
HLA-CQ95604 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC8.73□□□□□ -1.01
HLA-CQ95604 FABP7P1-201ENST00000424004 391 ntBASIC8.73□□□□□ -1.01
HLA-CQ95604 AC023469.2-201ENST00000425983 657 ntTSL 5 BASIC8.73□□□□□ -1.01
HLA-CQ95604 HNRNPA1P29-201ENST00000426409 879 ntBASIC8.73□□□□□ -1.01
HLA-CQ95604 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC8.73□□□□□ -1.01
HLA-CQ95604 LPP-AS1-201ENST00000434996 494 ntTSL 3 BASIC8.73□□□□□ -1.01
HLA-CQ95604 LINC01291-203ENST00000435984 565 ntTSL 3 BASIC8.73□□□□□ -1.01
HLA-CQ95604 WDR82P1-201ENST00000439836 939 ntBASIC8.73□□□□□ -1.01
HLA-CQ95604 AC092170.1-201ENST00000440211 356 ntBASIC8.73□□□□□ -1.01
HLA-CQ95604 NPM1P51-201ENST00000443470 744 ntBASIC8.73□□□□□ -1.01
HLA-CQ95604 GRM8-206ENST00000444921 1251 ntTSL 3 BASIC8.73□□□□□ -1.01
HLA-CQ95604 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC8.73□□□□□ -1.01
HLA-CQ95604 FAR2P1-206ENST00000449736 709 ntBASIC8.73□□□□□ -1.01
HLA-CQ95604 CHIAP1-201ENST00000456220 995 ntBASIC8.73□□□□□ -1.01
HLA-CQ95604 EIF3LP2-201ENST00000457262 807 ntBASIC8.73□□□□□ -1.01
HLA-CQ95604 OR13C1P-201ENST00000457612 963 ntBASIC8.73□□□□□ -1.01
HLA-CQ95604 NUTF2P4-201ENST00000458353 381 ntBASIC8.73□□□□□ -1.01
HLA-CQ95604 MEF2C-AS1-211ENST00000514092 501 ntTSL 3 BASIC8.73□□□□□ -1.01
HLA-CQ95604 AC022784.3-202ENST00000517816 826 ntTSL 3 BASIC8.73□□□□□ -1.01
HLA-CQ95604 AC012103.1-201ENST00000522281 780 ntTSL 3 BASIC8.73□□□□□ -1.01
HLA-CQ95604 LINC02365-203ENST00000522554 802 ntTSL 2 BASIC8.73□□□□□ -1.01
HLA-CQ95604 AC013701.1-201ENST00000522657 465 ntBASIC8.73□□□□□ -1.01
HLA-CQ95604 AC009806.1-201ENST00000526112 519 ntTSL 3 BASIC8.73□□□□□ -1.01
HLA-CQ95604 AP002336.1-201ENST00000531426 422 ntTSL 2 BASIC8.73□□□□□ -1.01
HLA-CQ95604 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC8.73□□□□□ -1.01
HLA-CQ95604 AL049875.1-202ENST00000556620 857 ntTSL 3 BASIC8.73□□□□□ -1.01
HLA-CQ95604 AC037198.1-201ENST00000560769 281 ntTSL 3 BASIC8.73□□□□□ -1.01
HLA-CQ95604 BLOC1S6-209ENST00000565409 616 ntTSL 4 BASIC8.73□□□□□ -1.01
HLA-CQ95604 MIR3671-201ENST00000580455 88 ntBASIC8.73□□□□□ -1.01
HLA-CQ95604 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC8.73□□□□□ -1.01
HLA-CQ95604 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC8.73□□□□□ -1.01
HLA-CQ95604 BNIP3P15-201ENST00000604600 301 ntBASIC8.73□□□□□ -1.01
HLA-CQ95604 MIR6745-201ENST00000612694 127 ntBASIC8.73□□□□□ -1.01
HLA-CQ95604 AC093838.1-201ENST00000613014 469 ntBASIC8.73□□□□□ -1.01
HLA-CQ95604 AC239600.2-201ENST00000619615 1165 ntBASIC8.73□□□□□ -1.01
HLA-CQ95604 LINC01739-205ENST00000641890 573 ntBASIC8.73□□□□□ -1.01
HLA-CQ95604 EP400-205ENST00000389562 12836 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
HLA-CQ95604 ABCA1-202ENST00000374736 10494 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
HLA-CQ95604 LGSN-201ENST00000370657 1949 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
HLA-CQ95604 ZKSCAN1-201ENST00000324306 9418 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
HLA-CQ95604 SERPINA1-201ENST00000355814 3236 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
HLA-CQ95604 PHTF2-205ENST00000416283 5198 ntTSL 5 BASIC8.73□□□□□ -1.01
HLA-CQ95604 COPB1-201ENST00000249923 3481 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
HLA-CQ95604 GLI1-208ENST00000546141 3475 ntTSL 5 BASIC8.73□□□□□ -1.01
HLA-CQ95604 CEACAM1-213ENST00000599389 1342 ntTSL 5 BASIC8.73□□□□□ -1.01
HLA-CQ95604 FHL1-230ENST00000630084 1335 ntTSL 2 BASIC8.73□□□□□ -1.01
HLA-CQ95604 AP002004.1-203ENST00000531091 1768 ntTSL 1 (best) BASIC8.73□□□□□ -1.01
HLA-CQ95604 PHF6-204ENST00000370803 4489 ntAPPRIS P2 TSL 1 (best) BASIC8.73□□□□□ -1.01
HLA-CQ95604 SP4-201ENST00000222584 6126 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
HLA-CQ95604 ZP2-203ENST00000574002 2749 ntAPPRIS P3 TSL 1 (best) BASIC8.73□□□□□ -1.01
HLA-CQ95604 IL18RAP-201ENST00000264260 2773 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
HLA-CQ95604 AC009403.2-202ENST00000636307 3956 ntTSL 5 BASIC8.72□□□□□ -1.01
HLA-CQ95604 FAM222B-201ENST00000341217 4033 ntTSL 5 BASIC8.72□□□□□ -1.01
HLA-CQ95604 CSNK2A1-202ENST00000349736 4299 ntAPPRIS P1 TSL 1 (best) BASIC8.72□□□□□ -1.01
HLA-CQ95604 MTRNR2L6-201ENST00000604952 1447 ntAPPRIS P1 BASIC8.72□□□□□ -1.01
HLA-CQ95604 TLR6-205ENST00000610323 1443 ntTSL 5 BASIC8.72□□□□□ -1.01
HLA-CQ95604 LINC00862-204ENST00000637098 1400 ntTSL 5 BASIC8.72□□□□□ -1.01
HLA-CQ95604 GDNF-AS1-205ENST00000637926 3819 ntTSL 5 BASIC8.72□□□□□ -1.01
HLA-CQ95604 CBLB-205ENST00000407712 1493 ntTSL 2 BASIC8.72□□□□□ -1.01
HLA-CQ95604 ESR1-206ENST00000427531 5436 ntTSL 1 (best) BASIC8.72□□□□□ -1.01
HLA-CQ95604 RSPH4A-203ENST00000368581 2704 ntTSL 1 (best) BASIC8.72□□□□□ -1.01
HLA-CQ95604 NR4A2-201ENST00000339562 3472 ntAPPRIS P1 TSL 1 (best) BASIC8.72□□□□□ -1.01
HLA-CQ95604 DTL-206ENST00000542077 4471 ntTSL 2 BASIC8.72□□□□□ -1.01
HLA-CQ95604 TRPM3-203ENST00000358082 4710 ntAPPRIS ALT2 TSL 5 BASIC8.72□□□□□ -1.01
HLA-CQ95604 TRPM3-213ENST00000396285 4701 ntAPPRIS ALT2 TSL 5 BASIC8.72□□□□□ -1.01
HLA-CQ95604 TRPM3-214ENST00000396292 4740 ntAPPRIS P4 TSL 5 BASIC8.72□□□□□ -1.01
HLA-CQ95604 TRPM3-215ENST00000408909 4701 ntAPPRIS ALT2 TSL 5 BASIC8.72□□□□□ -1.01
HLA-CQ95604 RBM7-204ENST00000541475 6725 ntTSL 2 BASIC8.72□□□□□ -1.01
HLA-CQ95604 C16orf62-205ENST00000513947 2501 ntTSL 1 (best) BASIC8.72□□□□□ -1.01
HLA-CQ95604 SLC16A1P1-201ENST00000486743 1510 ntBASIC8.72□□□□□ -1.01
HLA-CQ95604 OR11H1-201ENST00000252835 982 ntAPPRIS P1 BASIC8.72□□□□□ -1.01
HLA-CQ95604 OCM2-201ENST00000257627 696 ntAPPRIS P1 TSL 1 (best) BASIC8.72□□□□□ -1.01
HLA-CQ95604 CFHR1-201ENST00000320493 1271 ntAPPRIS P1 TSL 1 (best) BASIC8.72□□□□□ -1.01
HLA-CQ95604 FAM177B-201ENST00000360827 764 ntAPPRIS P1 TSL 5 BASIC8.72□□□□□ -1.01
HLA-CQ95604 RN7SKP173-201ENST00000362821 315 ntBASIC8.72□□□□□ -1.01
Retrieved 100 of 98,524 protein–RNA pairs in 72.8 ms