RNA–Protein interactions for RNA: ENST00000540876.1

CLDN2-202, Transcript of claudin 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLDN2, Length 2,919 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN2-202ENST00000540876 NISCHQ9Y2I1 1504 aa19.55■□□□□ 0.72
CLDN2-202ENST00000540876 CCDC180Q9P1Z9 1646 aa16.97■□□□□ 0.31
CLDN2-202ENST00000540876 PELP1Q8IZL8 1130 aaKnown RBP16.86■□□□□ 0.29
CLDN2-202ENST00000540876 ABCC9O60706 1549 aa16.66■□□□□ 0.26
CLDN2-202ENST00000540876 DCAF8L2P0C7V8 631 aa16.63■□□□□ 0.25
CLDN2-202ENST00000540876 HRCP23327 699 aa16.52■□□□□ 0.24
CLDN2-202ENST00000540876 MYT1Q01538 1121 aa16.37■□□□□ 0.21
CLDN2-202ENST00000540876 ZCCHC6Q5VYS8 1495 aaKnown RBP16.33■□□□□ 0.21
CLDN2-202ENST00000540876 PPARGC1BQ86YN6 1023 aaKnown RBP16.25■□□□□ 0.19
CLDN2-202ENST00000540876 SHROOM4Q9ULL8 1493 aa16.1■□□□□ 0.17
CLDN2-202ENST00000540876 SCAF1Q9H7N4 1312 aaKnown RBP16.01■□□□□ 0.15
CLDN2-202ENST00000540876 DCAF1Q9Y4B6 1507 aa16■□□□□ 0.15
CLDN2-202ENST00000540876 PCGF6Q9BYE7 350 aa15.97■□□□□ 0.15
CLDN2-202ENST00000540876 NACADO15069 1562 aa15.96■□□□□ 0.14
CLDN2-202ENST00000540876 RB1CC1Q8TDY2 1594 aa15.92■□□□□ 0.14
CLDN2-202ENST00000540876 MYO15BQ96JP2 1530 aa15.88■□□□□ 0.13
CLDN2-202ENST00000540876 SCRIBQ14160 1630 aa15.84■□□□□ 0.13
CLDN2-202ENST00000540876 PABPN1Q86U42 306 aaKnown RBP eCLIP15.79■□□□□ 0.12
CLDN2-202ENST00000540876 SUPT5HO00267 1087 aaKnown RBP15.6■□□□□ 0.09
CLDN2-202ENST00000540876 UNC13AQ9UPW8 1703 aa15.58■□□□□ 0.08
CLDN2-202ENST00000540876 BICRAQ9NZM4 1560 aa15.51■□□□□ 0.07
CLDN2-202ENST00000540876 TTBK1Q5TCY1 1321 aaPredicted RBP15.5■□□□□ 0.07
CLDN2-202ENST00000540876 ACIN1Q9UKV3 1341 aaKnown RBP15.41■□□□□ 0.06
CLDN2-202ENST00000540876 GTF3C3Q9Y5Q9 886 aa15.37■□□□□ 0.05
CLDN2-202ENST00000540876 NEUROD1Q13562 356 aa15.36■□□□□ 0.05
CLDN2-202ENST00000540876 CECR2Q9BXF3 1484 aa15.36■□□□□ 0.05
CLDN2-202ENST00000540876 BCL11AQ9H165 835 aa15.32■□□□□ 0.04
CLDN2-202ENST00000540876 ZEB1P37275 1124 aaPredicted RBP15.27■□□□□ 0.03
CLDN2-202ENST00000540876 CENPBP07199 599 aaPredicted RBP15.21■□□□□ 0.03
CLDN2-202ENST00000540876 TRIM26Q12899 539 aaPredicted RBP15.2■□□□□ 0.02
CLDN2-202ENST00000540876 PRKCSHP14314 528 aaPredicted RBP15.19■□□□□ 0.02
CLDN2-202ENST00000540876 FAM9AQ8IZU1 332 aaPredicted RBP15.19■□□□□ 0.02
CLDN2-202ENST00000540876 MROH2BQ7Z745 1585 aa15.18■□□□□ 0.02
CLDN2-202ENST00000540876 RSF1Q96T23 1441 aaPredicted RBP15.14■□□□□ 0.01
CLDN2-202ENST00000540876 CHIC1Q5VXU3 224 aa15.13■□□□□ 0.01
CLDN2-202ENST00000540876 DNAJC5BQ9UF47 199 aa15.08■□□□□ 0
CLDN2-202ENST00000540876 EIF4G1Q04637 1599 aaKnown RBP15.07■□□□□ 0
CLDN2-202ENST00000540876 BAZ1AQ9NRL2 1556 aaPredicted RBP15.07■□□□□ 0
CLDN2-202ENST00000540876 SMARCA4P51532 1647 aa15.05■□□□□ 0
CLDN2-202ENST00000540876 WIZO95785 1651 aa15.02□□□□□ -0.01
CLDN2-202ENST00000540876 LOC105371045A0A1W2PR82 267 aa14.94□□□□□ -0.02
CLDN2-202ENST00000540876 CC2D2AQ9P2K1 1620 aa14.94□□□□□ -0.02
CLDN2-202ENST00000540876 ATAD2BQ9ULI0 1458 aa14.94□□□□□ -0.02
CLDN2-202ENST00000540876 ANP32EQ9BTT0 268 aa14.89□□□□□ -0.03
CLDN2-202ENST00000540876 BAZ1BQ9UIG0 1483 aaKnown RBP14.84□□□□□ -0.03
CLDN2-202ENST00000540876 DIEXFQ68CQ4 756 aaKnown RBP14.84□□□□□ -0.03
CLDN2-202ENST00000540876 SMARCA2P51531 1590 aa14.82□□□□□ -0.04
CLDN2-202ENST00000540876 NCAPD3P42695 1498 aa14.8□□□□□ -0.04
CLDN2-202ENST00000540876 ERICH6Q7L0X2 663 aa14.8□□□□□ -0.04
CLDN2-202ENST00000540876 PEG3Q9GZU2 1588 aa14.79□□□□□ -0.04
CLDN2-202ENST00000540876 CSRNP3Q8WYN3 585 aa14.78□□□□□ -0.04
CLDN2-202ENST00000540876 YTHDC1Q96MU7 727 aaKnown RBP14.78□□□□□ -0.04
CLDN2-202ENST00000540876 TOP2AP11388 1531 aaKnown RBP14.75□□□□□ -0.05
CLDN2-202ENST00000540876 CCDC88BA6NC98 1476 aa14.71□□□□□ -0.05
CLDN2-202ENST00000540876 HMGXB3Q12766 1538 aa14.68□□□□□ -0.06
CLDN2-202ENST00000540876 APLP2Q06481 763 aa14.6□□□□□ -0.07
CLDN2-202ENST00000540876 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.57□□□□□ -0.08
CLDN2-202ENST00000540876 CCER1Q8TC90 406 aaPredicted RBP14.57□□□□□ -0.08
CLDN2-202ENST00000540876 NESP48681 1621 aa14.55□□□□□ -0.08
CLDN2-202ENST00000540876 TSHZ2Q9NRE2 1034 aa14.54□□□□□ -0.08
CLDN2-202ENST00000540876 EHMT2Q96KQ7 1210 aa14.51□□□□□ -0.09
CLDN2-202ENST00000540876 CADPSQ9ULU8 1353 aa14.48□□□□□ -0.09
CLDN2-202ENST00000540876 TRIM41Q8WV44 630 aa14.45□□□□□ -0.1
CLDN2-202ENST00000540876 SUPT16HQ9Y5B9 1047 aaKnown RBP14.43□□□□□ -0.1
CLDN2-202ENST00000540876 CFTRP13569 1480 aa14.42□□□□□ -0.1
CLDN2-202ENST00000540876 MIER1Q8N108 512 aa14.4□□□□□ -0.1
CLDN2-202ENST00000540876 ABCC8Q09428 1581 aa14.38□□□□□ -0.11
CLDN2-202ENST00000540876 ZNF316A6NFI3 1004 aaPredicted RBP14.37□□□□□ -0.11
CLDN2-202ENST00000540876 ANO8Q9HCE9 1232 aaPredicted RBP14.34□□□□□ -0.11
CLDN2-202ENST00000540876 FANCD2Q9BXW9 1451 aa14.32□□□□□ -0.12
CLDN2-202ENST00000540876 LAMC3Q9Y6N6 1575 aa14.28□□□□□ -0.12
CLDN2-202ENST00000540876 PDS5BQ9NTI5 1447 aa14.27□□□□□ -0.12
CLDN2-202ENST00000540876 CLSPNQ9HAW4 1339 aa14.27□□□□□ -0.13
CLDN2-202ENST00000540876 ERCC6Q03468 1493 aa14.26□□□□□ -0.13
CLDN2-202ENST00000540876 WRNQ14191 1432 aaPredicted RBP eCLIP14.25□□□□□ -0.13
CLDN2-202ENST00000540876 CEP164Q9UPV0 1460 aa14.22□□□□□ -0.13
CLDN2-202ENST00000540876 KIF21AQ7Z4S6 1674 aa14.21□□□□□ -0.14
CLDN2-202ENST00000540876 SYNJ1O43426 1573 aa14.19□□□□□ -0.14
CLDN2-202ENST00000540876 CUX1P39880 1505 aa14.18□□□□□ -0.14
CLDN2-202ENST00000540876 URB2Q14146 1524 aaKnown RBP14.17□□□□□ -0.14
CLDN2-202ENST00000540876 BCANQ96GW7 911 aa14.16□□□□□ -0.14
CLDN2-202ENST00000540876 RBM19Q9Y4C8 960 aaKnown RBP14.15□□□□□ -0.14
CLDN2-202ENST00000540876 PRDM2Q13029 1718 aa14.12□□□□□ -0.15
CLDN2-202ENST00000540876 TOPBP1Q92547 1522 aa14.11□□□□□ -0.15
CLDN2-202ENST00000540876 SALL2Q9Y467 1007 aaPredicted RBP14.1□□□□□ -0.15
CLDN2-202ENST00000540876 MRC2Q9UBG0 1479 aa14.09□□□□□ -0.15
CLDN2-202ENST00000540876 RAD54L2Q9Y4B4 1467 aa14.09□□□□□ -0.15
CLDN2-202ENST00000540876 CCDC136Q96JN2 1154 aa14.09□□□□□ -0.15
CLDN2-202ENST00000540876 SOGA1O94964 1423 aa14.09□□□□□ -0.15
CLDN2-202ENST00000540876 FGD5Q6ZNL6 1462 aa14.08□□□□□ -0.16
CLDN2-202ENST00000540876 MSH5O43196 834 aa14.08□□□□□ -0.16
CLDN2-202ENST00000540876 RUSC2Q8N2Y8 1516 aa14.07□□□□□ -0.16
CLDN2-202ENST00000540876 TOP2BQ02880 1626 aa14.06□□□□□ -0.16
CLDN2-202ENST00000540876 DEKP35659 375 aaKnown RBP14.06□□□□□ -0.16
CLDN2-202ENST00000540876 POLA1P09884 1462 aaPredicted RBP14.05□□□□□ -0.16
CLDN2-202ENST00000540876 DNMBPQ6XZF7 1577 aa14.04□□□□□ -0.16
CLDN2-202ENST00000540876 TDRD9Q8NDG6 1382 aaKnown RBP14.02□□□□□ -0.16
CLDN2-202ENST00000540876 UBE2Q2Q8WVN8 375 aa14.02□□□□□ -0.17
CLDN2-202ENST00000540876 THOC2Q8NI27 1593 aaKnown RBP14.01□□□□□ -0.17
CLDN2-202ENST00000540876 BIVM-ERCC5R4GMW8 1640 aa14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms