RNA–Protein interactions for RNA: ENST00000294816.6

LMX1A-201, Transcript of LIM homeobox transcription factor 1 alpha, humanhuman

APPRIS P1 TSL 2 BASIC

Gene LMX1A, Length 3,350 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1A-201ENST00000294816 NISCHQ9Y2I1 1504 aa19.38■□□□□ 0.69
LMX1A-201ENST00000294816 SHROOM4Q9ULL8 1493 aa17.45■□□□□ 0.38
LMX1A-201ENST00000294816 SUPT5HO00267 1087 aaKnown RBP17.37■□□□□ 0.37
LMX1A-201ENST00000294816 HRCP23327 699 aa17.23■□□□□ 0.35
LMX1A-201ENST00000294816 PCGF6Q9BYE7 350 aa17.09■□□□□ 0.33
LMX1A-201ENST00000294816 PPARGC1BQ86YN6 1023 aaKnown RBP17.02■□□□□ 0.32
LMX1A-201ENST00000294816 MYO15BQ96JP2 1530 aa16.89■□□□□ 0.29
LMX1A-201ENST00000294816 CHIC1Q5VXU3 224 aa16.87■□□□□ 0.29
LMX1A-201ENST00000294816 DCAF8L2P0C7V8 631 aa16.63■□□□□ 0.25
LMX1A-201ENST00000294816 LOC105371045A0A1W2PR82 267 aa16.59■□□□□ 0.25
LMX1A-201ENST00000294816 PELP1Q8IZL8 1130 aaKnown RBP16.45■□□□□ 0.22
LMX1A-201ENST00000294816 TRIM26Q12899 539 aaPredicted RBP16.44■□□□□ 0.22
LMX1A-201ENST00000294816 ZCCHC6Q5VYS8 1495 aaKnown RBP16.44■□□□□ 0.22
LMX1A-201ENST00000294816 DCAF1Q9Y4B6 1507 aa16.43■□□□□ 0.22
LMX1A-201ENST00000294816 SCAF1Q9H7N4 1312 aaKnown RBP16.28■□□□□ 0.2
LMX1A-201ENST00000294816 ZEB1P37275 1124 aaPredicted RBP16.26■□□□□ 0.19
LMX1A-201ENST00000294816 CCDC180Q9P1Z9 1646 aa16.19■□□□□ 0.18
LMX1A-201ENST00000294816 EHMT2Q96KQ7 1210 aa16.17■□□□□ 0.18
LMX1A-201ENST00000294816 FAM9AQ8IZU1 332 aaPredicted RBP16.13■□□□□ 0.17
LMX1A-201ENST00000294816 TRIM41Q8WV44 630 aa16■□□□□ 0.15
LMX1A-201ENST00000294816 ACIN1Q9UKV3 1341 aaKnown RBP15.92■□□□□ 0.14
LMX1A-201ENST00000294816 NEUROD1Q13562 356 aa15.91■□□□□ 0.14
LMX1A-201ENST00000294816 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.87■□□□□ 0.13
LMX1A-201ENST00000294816 CCER1Q8TC90 406 aaPredicted RBP15.86■□□□□ 0.13
LMX1A-201ENST00000294816 GTF3C3Q9Y5Q9 886 aa15.86■□□□□ 0.13
LMX1A-201ENST00000294816 CENPBP07199 599 aaPredicted RBP15.81■□□□□ 0.12
LMX1A-201ENST00000294816 DIEXFQ68CQ4 756 aaKnown RBP15.76■□□□□ 0.11
LMX1A-201ENST00000294816 TTBK1Q5TCY1 1321 aaPredicted RBP15.75■□□□□ 0.11
LMX1A-201ENST00000294816 MYT1Q01538 1121 aa15.75■□□□□ 0.11
LMX1A-201ENST00000294816 YTHDC1Q96MU7 727 aaKnown RBP15.66■□□□□ 0.1
LMX1A-201ENST00000294816 RSF1Q96T23 1441 aaPredicted RBP15.63■□□□□ 0.09
LMX1A-201ENST00000294816 ABCC9O60706 1549 aa15.6■□□□□ 0.09
LMX1A-201ENST00000294816 AEBP2Q6ZN18 517 aaPredicted RBP15.58■□□□□ 0.08
LMX1A-201ENST00000294816 RB1CC1Q8TDY2 1594 aa15.56■□□□□ 0.08
LMX1A-201ENST00000294816 SCRIBQ14160 1630 aa15.49■□□□□ 0.07
LMX1A-201ENST00000294816 ZNF316A6NFI3 1004 aaPredicted RBP15.44■□□□□ 0.06
LMX1A-201ENST00000294816 MIER1Q8N108 512 aa15.36■□□□□ 0.05
LMX1A-201ENST00000294816 HNRNPUL2Q1KMD3 747 aaKnown RBP15.28■□□□□ 0.04
LMX1A-201ENST00000294816 UBTFP17480 764 aaKnown RBP15.26■□□□□ 0.03
LMX1A-201ENST00000294816 CECR2Q9BXF3 1484 aa15.26■□□□□ 0.03
LMX1A-201ENST00000294816 CEP162Q5TB80 1403 aa15.21■□□□□ 0.03
LMX1A-201ENST00000294816 MROH2BQ7Z745 1585 aa15.19■□□□□ 0.02
LMX1A-201ENST00000294816 WRNQ14191 1432 aaPredicted RBP eCLIP15.14■□□□□ 0.01
LMX1A-201ENST00000294816 WIZO95785 1651 aa15.13■□□□□ 0.01
LMX1A-201ENST00000294816 CCDC88BA6NC98 1476 aa15.09■□□□□ 0.01
LMX1A-201ENST00000294816 ABCC8Q09428 1581 aa15.09■□□□□ 0.01
LMX1A-201ENST00000294816 RANGAP1P46060 587 aaPredicted RBP15.07■□□□□ 0
LMX1A-201ENST00000294816 SOGA1O94964 1423 aa15.07■□□□□ 0
LMX1A-201ENST00000294816 CSRNP3Q8WYN3 585 aa15.07■□□□□ 0
LMX1A-201ENST00000294816 TNIKQ9UKE5 1360 aa15.06■□□□□ 0
LMX1A-201ENST00000294816 SUPT16HQ9Y5B9 1047 aaKnown RBP15.05■□□□□ -0
LMX1A-201ENST00000294816 APLP2Q06481 763 aa15.03■□□□□ -0
LMX1A-201ENST00000294816 RUSC2Q8N2Y8 1516 aa14.97□□□□□ -0.01
LMX1A-201ENST00000294816 TSHZ2Q9NRE2 1034 aa14.95□□□□□ -0.02
LMX1A-201ENST00000294816 BCANQ96GW7 911 aa14.94□□□□□ -0.02
LMX1A-201ENST00000294816 NACADO15069 1562 aa14.94□□□□□ -0.02
LMX1A-201ENST00000294816 BAZ1AQ9NRL2 1556 aaPredicted RBP14.94□□□□□ -0.02
LMX1A-201ENST00000294816 ANP32EQ9BTT0 268 aa14.93□□□□□ -0.02
LMX1A-201ENST00000294816 EIF4G1Q04637 1599 aaKnown RBP14.91□□□□□ -0.02
LMX1A-201ENST00000294816 CLSPNQ9HAW4 1339 aa14.9□□□□□ -0.02
LMX1A-201ENST00000294816 GOLGA3Q08378 1498 aa14.9□□□□□ -0.02
LMX1A-201ENST00000294816 EEA1Q15075 1411 aa14.86□□□□□ -0.03
LMX1A-201ENST00000294816 BCL11AQ9H165 835 aa14.86□□□□□ -0.03
LMX1A-201ENST00000294816 CLIP1P30622 1438 aa14.85□□□□□ -0.03
LMX1A-201ENST00000294816 KCNH8Q96L42 1107 aa14.79□□□□□ -0.04
LMX1A-201ENST00000294816 TOP2AP11388 1531 aaKnown RBP14.78□□□□□ -0.04
LMX1A-201ENST00000294816 FKBP8Q14318 412 aa14.78□□□□□ -0.04
LMX1A-201ENST00000294816 ITGAEP38570 1179 aa14.77□□□□□ -0.04
LMX1A-201ENST00000294816 VPS8Q8N3P4 1428 aa14.76□□□□□ -0.05
LMX1A-201ENST00000294816 SMARCA2P51531 1590 aa14.75□□□□□ -0.05
LMX1A-201ENST00000294816 DHX57Q6P158 1386 aaKnown RBP14.74□□□□□ -0.05
LMX1A-201ENST00000294816 CEP164Q9UPV0 1460 aa14.74□□□□□ -0.05
LMX1A-201ENST00000294816 NEFLP07196 543 aa14.7□□□□□ -0.06
LMX1A-201ENST00000294816 DDX10Q13206 875 aaKnown RBP14.65□□□□□ -0.06
LMX1A-201ENST00000294816 SMARCA4P51532 1647 aa14.64□□□□□ -0.07
LMX1A-201ENST00000294816 RAPGEF2Q9Y4G8 1499 aa14.64□□□□□ -0.07
LMX1A-201ENST00000294816 KANK4Q5T7N3 995 aaPredicted RBP14.64□□□□□ -0.07
LMX1A-201ENST00000294816 RBM19Q9Y4C8 960 aaKnown RBP14.64□□□□□ -0.07
LMX1A-201ENST00000294816 TRIM52Q96A61 297 aa14.61□□□□□ -0.07
LMX1A-201ENST00000294816 KIF21BO75037 1637 aa14.59□□□□□ -0.07
LMX1A-201ENST00000294816 HIRIP3Q9BW71 556 aaPredicted RBP14.57□□□□□ -0.08
LMX1A-201ENST00000294816 ERICH6Q7L0X2 663 aa14.56□□□□□ -0.08
LMX1A-201ENST00000294816 PABPN1Q86U42 306 aaKnown RBP eCLIP14.56□□□□□ -0.08
LMX1A-201ENST00000294816 SYNJ1O43426 1573 aa14.55□□□□□ -0.08
LMX1A-201ENST00000294816 BAZ1BQ9UIG0 1483 aaKnown RBP14.53□□□□□ -0.08
LMX1A-201ENST00000294816 SIN3AQ96ST3 1273 aa14.5□□□□□ -0.09
LMX1A-201ENST00000294816 ANP32CO43423 234 aa14.48□□□□□ -0.09
LMX1A-201ENST00000294816 IRX6P78412 446 aaPredicted RBP14.48□□□□□ -0.09
LMX1A-201ENST00000294816 CCNB3Q8WWL7 1395 aa14.47□□□□□ -0.09
LMX1A-201ENST00000294816 UNC13AQ9UPW8 1703 aa14.47□□□□□ -0.09
LMX1A-201ENST00000294816 RAB3GAP2Q9H2M9 1393 aa14.45□□□□□ -0.1
LMX1A-201ENST00000294816 MSH5O43196 834 aa14.45□□□□□ -0.1
LMX1A-201ENST00000294816 FAM50AQ14320 339 aaKnown RBP14.43□□□□□ -0.1
LMX1A-201ENST00000294816 ARAP1Q96P48 1450 aa14.43□□□□□ -0.1
LMX1A-201ENST00000294816 RRBP1Q9P2E9 1410 aaKnown RBP14.41□□□□□ -0.1
LMX1A-201ENST00000294816 CDK11AQ9UQ88 783 aaPredicted RBP14.41□□□□□ -0.1
LMX1A-201ENST00000294816 ATP1B4Q9UN42 357 aaPredicted RBP14.39□□□□□ -0.11
LMX1A-201ENST00000294816 PHF23Q9BUL5 403 aaPredicted RBP14.39□□□□□ -0.11
LMX1A-201ENST00000294816 PPP1R15AO75807 674 aaPredicted RBP14.38□□□□□ -0.11
LMX1A-201ENST00000294816 HNRNPUQ00839 825 aaKnown RBP eCLIP14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms