RNA–Protein interactions for RNA: ENST00000286301.7

CSF1R-201, Transcript of colony stimulating factor 1 receptor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSF1R, Length 3,989 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSF1R-201ENST00000286301 NISCHQ9Y2I1 1504 aa18.87■□□□□ 0.61
CSF1R-201ENST00000286301 DCAF8L2P0C7V8 631 aa17.05■□□□□ 0.32
CSF1R-201ENST00000286301 SHROOM4Q9ULL8 1493 aa16.76■□□□□ 0.27
CSF1R-201ENST00000286301 SUPT5HO00267 1087 aaKnown RBP16.46■□□□□ 0.23
CSF1R-201ENST00000286301 CCDC180Q9P1Z9 1646 aa15.81■□□□□ 0.12
CSF1R-201ENST00000286301 ZCCHC6Q5VYS8 1495 aaKnown RBP15.78■□□□□ 0.12
CSF1R-201ENST00000286301 ABCC9O60706 1549 aa15.73■□□□□ 0.11
CSF1R-201ENST00000286301 EHMT2Q96KQ7 1210 aa15.51■□□□□ 0.07
CSF1R-201ENST00000286301 CHIC1Q5VXU3 224 aa15.37■□□□□ 0.05
CSF1R-201ENST00000286301 FAM9AQ8IZU1 332 aaPredicted RBP15.36■□□□□ 0.05
CSF1R-201ENST00000286301 SCRIBQ14160 1630 aa15.33■□□□□ 0.05
CSF1R-201ENST00000286301 PABPN1Q86U42 306 aaKnown RBP eCLIP15.26■□□□□ 0.03
CSF1R-201ENST00000286301 TRIM41Q8WV44 630 aa15.21■□□□□ 0.03
CSF1R-201ENST00000286301 LOC105371045A0A1W2PR82 267 aa15.17■□□□□ 0.02
CSF1R-201ENST00000286301 DCAF1Q9Y4B6 1507 aa15.15■□□□□ 0.02
CSF1R-201ENST00000286301 PCGF6Q9BYE7 350 aa15.03■□□□□ -0
CSF1R-201ENST00000286301 RSF1Q96T23 1441 aaPredicted RBP14.96□□□□□ -0.01
CSF1R-201ENST00000286301 NACADO15069 1562 aa14.96□□□□□ -0.02
CSF1R-201ENST00000286301 CECR2Q9BXF3 1484 aa14.91□□□□□ -0.02
CSF1R-201ENST00000286301 MYO15BQ96JP2 1530 aa14.91□□□□□ -0.02
CSF1R-201ENST00000286301 RB1CC1Q8TDY2 1594 aa14.9□□□□□ -0.02
CSF1R-201ENST00000286301 TTBK1Q5TCY1 1321 aaPredicted RBP14.88□□□□□ -0.03
CSF1R-201ENST00000286301 PPARGC1BQ86YN6 1023 aaKnown RBP14.83□□□□□ -0.03
CSF1R-201ENST00000286301 RANGAP1P46060 587 aaPredicted RBP14.81□□□□□ -0.04
CSF1R-201ENST00000286301 HRCP23327 699 aa14.74□□□□□ -0.05
CSF1R-201ENST00000286301 MROH2BQ7Z745 1585 aa14.73□□□□□ -0.05
CSF1R-201ENST00000286301 UBTFP17480 764 aaKnown RBP14.72□□□□□ -0.05
CSF1R-201ENST00000286301 WIZO95785 1651 aa14.59□□□□□ -0.07
CSF1R-201ENST00000286301 PELP1Q8IZL8 1130 aaKnown RBP14.57□□□□□ -0.08
CSF1R-201ENST00000286301 BAZ1AQ9NRL2 1556 aaPredicted RBP14.56□□□□□ -0.08
CSF1R-201ENST00000286301 TRIM26Q12899 539 aaPredicted RBP14.54□□□□□ -0.08
CSF1R-201ENST00000286301 APLP2Q06481 763 aa14.46□□□□□ -0.09
CSF1R-201ENST00000286301 CCDC88BA6NC98 1476 aa14.41□□□□□ -0.1
CSF1R-201ENST00000286301 CSRNP3Q8WYN3 585 aa14.39□□□□□ -0.11
CSF1R-201ENST00000286301 SMARCA4P51532 1647 aa14.36□□□□□ -0.11
CSF1R-201ENST00000286301 ABCC8Q09428 1581 aa14.36□□□□□ -0.11
CSF1R-201ENST00000286301 BAZ1BQ9UIG0 1483 aaKnown RBP14.35□□□□□ -0.11
CSF1R-201ENST00000286301 CCER1Q8TC90 406 aaPredicted RBP14.33□□□□□ -0.12
CSF1R-201ENST00000286301 ATP1B4Q9UN42 357 aaPredicted RBP14.32□□□□□ -0.12
CSF1R-201ENST00000286301 TOP2AP11388 1531 aaKnown RBP14.29□□□□□ -0.12
CSF1R-201ENST00000286301 SOGA1O94964 1423 aa14.26□□□□□ -0.13
CSF1R-201ENST00000286301 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.25□□□□□ -0.13
CSF1R-201ENST00000286301 WRNQ14191 1432 aaPredicted RBP eCLIP14.25□□□□□ -0.13
CSF1R-201ENST00000286301 SCAF1Q9H7N4 1312 aaKnown RBP14.23□□□□□ -0.13
CSF1R-201ENST00000286301 ATAD2BQ9ULI0 1458 aa14.22□□□□□ -0.13
CSF1R-201ENST00000286301 HNRNPUL2Q1KMD3 747 aaKnown RBP14.22□□□□□ -0.13
CSF1R-201ENST00000286301 UNC13AQ9UPW8 1703 aa14.22□□□□□ -0.13
CSF1R-201ENST00000286301 BICRAQ9NZM4 1560 aa14.22□□□□□ -0.13
CSF1R-201ENST00000286301 SMARCA2P51531 1590 aa14.18□□□□□ -0.14
CSF1R-201ENST00000286301 ZEB1P37275 1124 aaPredicted RBP14.14□□□□□ -0.15
CSF1R-201ENST00000286301 ITGAEP38570 1179 aa14.14□□□□□ -0.15
CSF1R-201ENST00000286301 RUSC2Q8N2Y8 1516 aa14.12□□□□□ -0.15
CSF1R-201ENST00000286301 P3H3Q8IVL6 736 aa14.09□□□□□ -0.15
CSF1R-201ENST00000286301 CEP162Q5TB80 1403 aa14.09□□□□□ -0.15
CSF1R-201ENST00000286301 MYT1Q01538 1121 aa14.02□□□□□ -0.17
CSF1R-201ENST00000286301 EIF4G1Q04637 1599 aaKnown RBP14.01□□□□□ -0.17
CSF1R-201ENST00000286301 GOLGA3Q08378 1498 aa14□□□□□ -0.17
CSF1R-201ENST00000286301 EEA1Q15075 1411 aa14□□□□□ -0.17
CSF1R-201ENST00000286301 TNIKQ9UKE5 1360 aa13.99□□□□□ -0.17
CSF1R-201ENST00000286301 CLIP1P30622 1438 aa13.99□□□□□ -0.17
CSF1R-201ENST00000286301 CEP164Q9UPV0 1460 aa13.93□□□□□ -0.18
CSF1R-201ENST00000286301 NCAPD3P42695 1498 aa13.91□□□□□ -0.18
CSF1R-201ENST00000286301 KIF27Q86VH2 1401 aa13.89□□□□□ -0.19
CSF1R-201ENST00000286301 ARID3CA6NKF2 412 aa13.89□□□□□ -0.19
CSF1R-201ENST00000286301 CENPBP07199 599 aaPredicted RBP13.88□□□□□ -0.19
CSF1R-201ENST00000286301 SYNJ1O43426 1573 aa13.88□□□□□ -0.19
CSF1R-201ENST00000286301 GTF3C3Q9Y5Q9 886 aa13.88□□□□□ -0.19
CSF1R-201ENST00000286301 CADPSQ9ULU8 1353 aa13.88□□□□□ -0.19
CSF1R-201ENST00000286301 RAPGEF2Q9Y4G8 1499 aa13.87□□□□□ -0.19
CSF1R-201ENST00000286301 FAM50AQ14320 339 aaKnown RBP13.87□□□□□ -0.19
CSF1R-201ENST00000286301 DNAJC5BQ9UF47 199 aa13.86□□□□□ -0.19
CSF1R-201ENST00000286301 CUX2O14529 1486 aa13.86□□□□□ -0.19
CSF1R-201ENST00000286301 FBLN2P98095 1184 aa13.86□□□□□ -0.19
CSF1R-201ENST00000286301 NEUROD1Q13562 356 aa13.81□□□□□ -0.2
CSF1R-201ENST00000286301 PEG3Q9GZU2 1588 aa13.81□□□□□ -0.2
CSF1R-201ENST00000286301 YTHDC1Q96MU7 727 aaKnown RBP13.78□□□□□ -0.2
CSF1R-201ENST00000286301 CC2D2AQ9P2K1 1620 aa13.77□□□□□ -0.21
CSF1R-201ENST00000286301 CARMIL1Q5VZK9 1371 aa13.76□□□□□ -0.21
CSF1R-201ENST00000286301 ACIN1Q9UKV3 1341 aaKnown RBP13.75□□□□□ -0.21
CSF1R-201ENST00000286301 NESP48681 1621 aa13.74□□□□□ -0.21
CSF1R-201ENST00000286301 CFTRP13569 1480 aa13.74□□□□□ -0.21
CSF1R-201ENST00000286301 KANK4Q5T7N3 995 aaPredicted RBP13.74□□□□□ -0.21
CSF1R-201ENST00000286301 TDRD9Q8NDG6 1382 aaKnown RBP13.74□□□□□ -0.21
CSF1R-201ENST00000286301 HMGXB3Q12766 1538 aa13.73□□□□□ -0.21
CSF1R-201ENST00000286301 FANCD2Q9BXW9 1451 aa13.73□□□□□ -0.21
CSF1R-201ENST00000286301 VPS8Q8N3P4 1428 aa13.71□□□□□ -0.21
CSF1R-201ENST00000286301 CUX1P39880 1505 aa13.7□□□□□ -0.22
CSF1R-201ENST00000286301 DIEXFQ68CQ4 756 aaKnown RBP13.69□□□□□ -0.22
CSF1R-201ENST00000286301 FGD5Q6ZNL6 1462 aa13.67□□□□□ -0.22
CSF1R-201ENST00000286301 RAD54L2Q9Y4B4 1467 aa13.67□□□□□ -0.22
CSF1R-201ENST00000286301 TOP2BQ02880 1626 aa13.65□□□□□ -0.22
CSF1R-201ENST00000286301 IGF1RP08069 1367 aa13.65□□□□□ -0.22
CSF1R-201ENST00000286301 PDS5BQ9NTI5 1447 aa13.62□□□□□ -0.23
CSF1R-201ENST00000286301 CHMP7Q8WUX9 453 aaPredicted RBP13.57□□□□□ -0.24
CSF1R-201ENST00000286301 ERCC6Q03468 1493 aa13.56□□□□□ -0.24
CSF1R-201ENST00000286301 ZNF316A6NFI3 1004 aaPredicted RBP13.56□□□□□ -0.24
CSF1R-201ENST00000286301 KIF21BO75037 1637 aa13.56□□□□□ -0.24
CSF1R-201ENST00000286301 CHIC2Q9UKJ5 165 aa13.55□□□□□ -0.24
CSF1R-201ENST00000286301 MTUS2Q5JR59 1369 aa13.55□□□□□ -0.24
CSF1R-201ENST00000286301 PRXQ9BXM0 1461 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 94.1 ms