RNA–Protein interactions for RNA: ENST00000376893.7

SSX3-202, Transcript of SSX family member 3, humanhuman

TSL 2 BASIC

Gene SSX3, Length 800 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSX3-202ENST00000376893 CHIC1Q5VXU3 224 aa18.44■□□□□ 0.54
SSX3-202ENST00000376893 AEBP2Q6ZN18 517 aaPredicted RBP18.37■□□□□ 0.53
SSX3-202ENST00000376893 POTEDQ86YR6 584 aa16.76■□□□□ 0.27
SSX3-202ENST00000376893 PHF23Q9BUL5 403 aaPredicted RBP16.31■□□□□ 0.2
SSX3-202ENST00000376893 SENP3Q9H4L4 574 aaPredicted RBP15.45■□□□□ 0.06
SSX3-202ENST00000376893 PLPPR3Q6T4P5 718 aa15.41■□□□□ 0.06
SSX3-202ENST00000376893 EHMT2Q96KQ7 1210 aa14.58□□□□□ -0.08
SSX3-202ENST00000376893 KCNA4P22459 653 aa14.42□□□□□ -0.1
SSX3-202ENST00000376893 FOXD1Q16676 465 aa14.3□□□□□ -0.12
SSX3-202ENST00000376893 ADRA2BP18089 450 aa14.26□□□□□ -0.13
SSX3-202ENST00000376893 PPP6R1Q9UPN7 881 aa14.21□□□□□ -0.13
SSX3-202ENST00000376893 CSRNP3Q8WYN3 585 aa14.07□□□□□ -0.16
SSX3-202ENST00000376893 SLC4A1APQ9BWU0 796 aaKnown RBP13.95□□□□□ -0.18
SSX3-202ENST00000376893 SLC24A1O60721 1099 aa13.68□□□□□ -0.22
SSX3-202ENST00000376893 NCBP3Q53F19 620 aaKnown RBP13.66□□□□□ -0.22
SSX3-202ENST00000376893 PPP4R3CPQ6ZMV5 832 aa13.64□□□□□ -0.23
SSX3-202ENST00000376893 PIAS4Q8N2W9 510 aaPredicted RBP13.59□□□□□ -0.23
SSX3-202ENST00000376893 MSH5O43196 834 aa13.54□□□□□ -0.24
SSX3-202ENST00000376893 AMER1Q5JTC6 1135 aaPredicted RBP13.39□□□□□ -0.27
SSX3-202ENST00000376893 NPM3O75607 178 aaKnown RBP13.38□□□□□ -0.27
SSX3-202ENST00000376893 NISCHQ9Y2I1 1504 aa13.34□□□□□ -0.27
SSX3-202ENST00000376893 ZBTB22O15209 634 aa13.28□□□□□ -0.28
SSX3-202ENST00000376893 RTN4Q9NQC3 1192 aaKnown RBP13.26□□□□□ -0.29
SSX3-202ENST00000376893 DNAJC5BQ9UF47 199 aa13.11□□□□□ -0.31
SSX3-202ENST00000376893 CNKSR2Q8WXI2 1034 aa13.1□□□□□ -0.31
SSX3-202ENST00000376893 FOXD4L1Q9NU39 408 aa13.07□□□□□ -0.32
SSX3-202ENST00000376893 SCAF1Q9H7N4 1312 aaKnown RBP12.93□□□□□ -0.34
SSX3-202ENST00000376893 CACNB1Q02641 598 aaPredicted RBP12.91□□□□□ -0.34
SSX3-202ENST00000376893 MAPK8IP2Q13387 824 aaPredicted RBP12.72□□□□□ -0.37
SSX3-202ENST00000376893 POTEHQ6S545 545 aa12.71□□□□□ -0.37
SSX3-202ENST00000376893 ATXN8OSP0DMR3 200 aa12.64□□□□□ -0.39
SSX3-202ENST00000376893 FKBP8Q14318 412 aa12.61□□□□□ -0.39
SSX3-202ENST00000376893 RNF216Q9NWF9 866 aaPredicted RBP12.61□□□□□ -0.39
SSX3-202ENST00000376893 DMRT2Q9Y5R5 561 aa12.44□□□□□ -0.42
SSX3-202ENST00000376893 HOXD11P31277 338 aaPredicted RBP12.41□□□□□ -0.42
SSX3-202ENST00000376893 MYCNP04198 464 aaPredicted RBP12.4□□□□□ -0.42
SSX3-202ENST00000376893 SLC4A2P04920 1241 aa12.38□□□□□ -0.43
SSX3-202ENST00000376893 PLCB2Q00722 1185 aa12.25□□□□□ -0.45
SSX3-202ENST00000376893 BCANQ96GW7 911 aa12.12□□□□□ -0.47
SSX3-202ENST00000376893 FBXO3Q9UK99 471 aa12.03□□□□□ -0.48
SSX3-202ENST00000376893 VSIG10Q8N0Z9 540 aa11.98□□□□□ -0.49
SSX3-202ENST00000376893 HAP1P54257 671 aaPredicted RBP11.97□□□□□ -0.49
SSX3-202ENST00000376893 TAOK2Q9UL54 1235 aa11.97□□□□□ -0.49
SSX3-202ENST00000376893 CCDC180Q9P1Z9 1646 aa11.89□□□□□ -0.51
SSX3-202ENST00000376893 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.88□□□□□ -0.51
SSX3-202ENST00000376893 PRKCSHP14314 528 aaPredicted RBP11.88□□□□□ -0.51
SSX3-202ENST00000376893 HNRNPUL2Q1KMD3 747 aaKnown RBP11.88□□□□□ -0.51
SSX3-202ENST00000376893 SAMD1Q6SPF0 538 aaPredicted RBP11.86□□□□□ -0.51
SSX3-202ENST00000376893 ATF5Q9Y2D1 282 aaPredicted RBP11.86□□□□□ -0.51
SSX3-202ENST00000376893 DCAF8L1A6NGE4 600 aa11.79□□□□□ -0.52
SSX3-202ENST00000376893 PROM2Q8N271 834 aa11.78□□□□□ -0.52
SSX3-202ENST00000376893 VASPP50552 380 aaPredicted RBP11.77□□□□□ -0.53
SSX3-202ENST00000376893 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.76□□□□□ -0.53
SSX3-202ENST00000376893 TPRNQ4KMQ1 711 aa11.7□□□□□ -0.54
SSX3-202ENST00000376893 SPDYE4A6NLX3 237 aa11.69□□□□□ -0.54
SSX3-202ENST00000376893 DCAF8L2P0C7V8 631 aa11.69□□□□□ -0.54
SSX3-202ENST00000376893 U3KPZ7 1027 aaPredicted RBP11.69□□□□□ -0.54
SSX3-202ENST00000376893 PKD2Q13563 968 aa11.66□□□□□ -0.54
SSX3-202ENST00000376893 IFNLR1Q8IU57 520 aaPredicted RBP11.65□□□□□ -0.54
SSX3-202ENST00000376893 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.65□□□□□ -0.54
SSX3-202ENST00000376893 BBXQ8WY36 941 aaPredicted RBP11.64□□□□□ -0.55
SSX3-202ENST00000376893 ABCC9O60706 1549 aa11.63□□□□□ -0.55
SSX3-202ENST00000376893 ZNF219Q9P2Y4 722 aaPredicted RBP11.62□□□□□ -0.55
SSX3-202ENST00000376893 KDM2AQ9Y2K7 1162 aa11.62□□□□□ -0.55
SSX3-202ENST00000376893 APLP2Q06481 763 aa11.54□□□□□ -0.56
SSX3-202ENST00000376893 FBLN2P98095 1184 aa11.49□□□□□ -0.57
SSX3-202ENST00000376893 ERICH6Q7L0X2 663 aa11.48□□□□□ -0.57
SSX3-202ENST00000376893 PAXIP1Q6ZW49 1069 aaPredicted RBP11.47□□□□□ -0.57
SSX3-202ENST00000376893 MKRN4PQ13434 485 aaPredicted RBP11.45□□□□□ -0.58
SSX3-202ENST00000376893 NPM1P06748 294 aaKnown RBP eCLIP11.41□□□□□ -0.58
SSX3-202ENST00000376893 ARXQ96QS3 562 aa11.41□□□□□ -0.58
SSX3-202ENST00000376893 SPRYD3Q8NCJ5 442 aa11.4□□□□□ -0.58
SSX3-202ENST00000376893 CFAP44Q96MT7 982 aa11.4□□□□□ -0.58
SSX3-202ENST00000376893 RNF39Q9H2S5 420 aa11.4□□□□□ -0.58
SSX3-202ENST00000376893 SPOCK2Q92563 424 aa11.39□□□□□ -0.59
SSX3-202ENST00000376893 PLSCR2Q9NRY7 297 aa11.39□□□□□ -0.59
SSX3-202ENST00000376893 ECM2O94769 699 aaPredicted RBP11.38□□□□□ -0.59
SSX3-202ENST00000376893 DNAJC5Q9H3Z4 198 aa11.38□□□□□ -0.59
SSX3-202ENST00000376893 DAXXQ9UER7 740 aaPredicted RBP11.38□□□□□ -0.59
SSX3-202ENST00000376893 TIMELESSQ9UNS1 1208 aa11.36□□□□□ -0.59
SSX3-202ENST00000376893 NBR1Q14596 966 aa11.31□□□□□ -0.6
SSX3-202ENST00000376893 TSHZ2Q9NRE2 1034 aa11.31□□□□□ -0.6
SSX3-202ENST00000376893 TULP1O00294 542 aaPredicted RBP11.28□□□□□ -0.6
SSX3-202ENST00000376893 GTF3C3Q9Y5Q9 886 aa11.28□□□□□ -0.6
SSX3-202ENST00000376893 KLHL34Q8N239 644 aa11.25□□□□□ -0.61
SSX3-202ENST00000376893 RGL2O15211 777 aa11.23□□□□□ -0.61
SSX3-202ENST00000376893 SPINK5Q9NQ38 1064 aaPredicted RBP11.2□□□□□ -0.62
SSX3-202ENST00000376893 STAG3Q9UJ98 1225 aa11.2□□□□□ -0.62
SSX3-202ENST00000376893 ZCCHC6Q5VYS8 1495 aaKnown RBP11.17□□□□□ -0.62
SSX3-202ENST00000376893 TMEM132AQ24JP5 1023 aa11.16□□□□□ -0.62
SSX3-202ENST00000376893 TRHP20396 242 aaPredicted RBP11.15□□□□□ -0.62
SSX3-202ENST00000376893 RB1CC1Q8TDY2 1594 aa11.15□□□□□ -0.62
SSX3-202ENST00000376893 POLA2Q14181 598 aa11.13□□□□□ -0.63
SSX3-202ENST00000376893 CHGAP10645 457 aaKnown RBP11.11□□□□□ -0.63
SSX3-202ENST00000376893 TRIM41Q8WV44 630 aa11.11□□□□□ -0.63
SSX3-202ENST00000376893 ZBTB12Q9Y330 459 aaPredicted RBP11.11□□□□□ -0.63
SSX3-202ENST00000376893 NACADO15069 1562 aa11.11□□□□□ -0.63
SSX3-202ENST00000376893 C1QBPQ07021 282 aaKnown RBP11.08□□□□□ -0.64
SSX3-202ENST00000376893 HOMEZQ8IX15 550 aa11.08□□□□□ -0.64
SSX3-202ENST00000376893 HS6ST3Q8IZP7 471 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms