Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TRIM56Q9BRZ2 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TRIM56Q9BRZ2 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TRIM56Q9BRZ2 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
TRIM56Q9BRZ2 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TRIM56Q9BRZ2 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC20.24■□□□□ 0.83
TRIM56Q9BRZ2 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
TRIM56Q9BRZ2 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
TRIM56Q9BRZ2 AL355472.2-201ENST00000422958 438 ntBASIC20.24■□□□□ 0.83
TRIM56Q9BRZ2 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC20.24■□□□□ 0.83
TRIM56Q9BRZ2 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC20.24■□□□□ 0.83
TRIM56Q9BRZ2 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC20.24■□□□□ 0.83
TRIM56Q9BRZ2 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
TRIM56Q9BRZ2 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC20.24■□□□□ 0.83
TRIM56Q9BRZ2 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC20.24■□□□□ 0.83
TRIM56Q9BRZ2 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC20.24■□□□□ 0.83
TRIM56Q9BRZ2 MOK-225ENST00000522867 1883 ntTSL 5 BASIC20.24■□□□□ 0.83
TRIM56Q9BRZ2 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TRIM56Q9BRZ2 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC20.24■□□□□ 0.83
TRIM56Q9BRZ2 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TRIM56Q9BRZ2 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC20.24■□□□□ 0.83
TRIM56Q9BRZ2 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC20.23■□□□□ 0.83
TRIM56Q9BRZ2 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM56Q9BRZ2 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM56Q9BRZ2 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM56Q9BRZ2 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM56Q9BRZ2 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC20.23■□□□□ 0.83
TRIM56Q9BRZ2 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC20.23■□□□□ 0.83
TRIM56Q9BRZ2 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
TRIM56Q9BRZ2 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM56Q9BRZ2 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC20.23■□□□□ 0.83
TRIM56Q9BRZ2 CYP2T1P-201ENST00000432607 1285 ntBASIC20.23■□□□□ 0.83
TRIM56Q9BRZ2 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM56Q9BRZ2 AL162412.1-201ENST00000567129 965 ntBASIC20.23■□□□□ 0.83
TRIM56Q9BRZ2 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM56Q9BRZ2 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM56Q9BRZ2 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM56Q9BRZ2 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC20.23■□□□□ 0.83
TRIM56Q9BRZ2 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC20.23■□□□□ 0.83
TRIM56Q9BRZ2 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM56Q9BRZ2 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM56Q9BRZ2 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM56Q9BRZ2 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC20.23■□□□□ 0.83
TRIM56Q9BRZ2 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
TRIM56Q9BRZ2 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TRIM56Q9BRZ2 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC20.22■□□□□ 0.83
TRIM56Q9BRZ2 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TRIM56Q9BRZ2 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
TRIM56Q9BRZ2 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
TRIM56Q9BRZ2 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
TRIM56Q9BRZ2 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
TRIM56Q9BRZ2 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
TRIM56Q9BRZ2 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TRIM56Q9BRZ2 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
TRIM56Q9BRZ2 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC20.22■□□□□ 0.83
TRIM56Q9BRZ2 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TRIM56Q9BRZ2 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TRIM56Q9BRZ2 PBX1-209ENST00000485769 834 ntTSL 2 BASIC20.22■□□□□ 0.83
TRIM56Q9BRZ2 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC20.22■□□□□ 0.83
TRIM56Q9BRZ2 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC20.22■□□□□ 0.83
TRIM56Q9BRZ2 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
TRIM56Q9BRZ2 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TRIM56Q9BRZ2 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
TRIM56Q9BRZ2 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
TRIM56Q9BRZ2 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
TRIM56Q9BRZ2 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
TRIM56Q9BRZ2 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRIM56Q9BRZ2 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRIM56Q9BRZ2 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRIM56Q9BRZ2 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRIM56Q9BRZ2 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC20.21■□□□□ 0.83
TRIM56Q9BRZ2 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRIM56Q9BRZ2 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC20.21■□□□□ 0.83
TRIM56Q9BRZ2 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC20.21■□□□□ 0.83
TRIM56Q9BRZ2 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
TRIM56Q9BRZ2 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRIM56Q9BRZ2 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRIM56Q9BRZ2 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC20.21■□□□□ 0.83
TRIM56Q9BRZ2 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC20.21■□□□□ 0.83
TRIM56Q9BRZ2 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC20.21■□□□□ 0.83
TRIM56Q9BRZ2 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC20.21■□□□□ 0.83
TRIM56Q9BRZ2 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC20.21■□□□□ 0.83
TRIM56Q9BRZ2 MAZ-216ENST00000616501 991 ntTSL 5 BASIC20.21■□□□□ 0.83
TRIM56Q9BRZ2 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
TRIM56Q9BRZ2 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRIM56Q9BRZ2 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC20.21■□□□□ 0.83
TRIM56Q9BRZ2 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRIM56Q9BRZ2 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRIM56Q9BRZ2 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
TRIM56Q9BRZ2 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRIM56Q9BRZ2 PWWP2AP1-201ENST00000429776 2273 ntBASIC20.21■□□□□ 0.83
TRIM56Q9BRZ2 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
TRIM56Q9BRZ2 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
TRIM56Q9BRZ2 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRIM56Q9BRZ2 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.83
TRIM56Q9BRZ2 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.83
TRIM56Q9BRZ2 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM56Q9BRZ2 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM56Q9BRZ2 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC20.2■□□□□ 0.82
TRIM56Q9BRZ2 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 56 ms