Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC18.37■□□□□ 0.53
ZNF540Q8NDQ6 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC18.37■□□□□ 0.53
ZNF540Q8NDQ6 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC18.37■□□□□ 0.53
ZNF540Q8NDQ6 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
ZNF540Q8NDQ6 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC18.37■□□□□ 0.53
ZNF540Q8NDQ6 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
ZNF540Q8NDQ6 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
ZNF540Q8NDQ6 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC18.37■□□□□ 0.53
ZNF540Q8NDQ6 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
ZNF540Q8NDQ6 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
ZNF540Q8NDQ6 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
ZNF540Q8NDQ6 AP004607.4-201ENST00000530158 1459 ntBASIC18.37■□□□□ 0.53
ZNF540Q8NDQ6 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC18.37■□□□□ 0.53
ZNF540Q8NDQ6 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
ZNF540Q8NDQ6 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
ZNF540Q8NDQ6 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
ZNF540Q8NDQ6 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC18.37■□□□□ 0.53
ZNF540Q8NDQ6 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC18.37■□□□□ 0.53
ZNF540Q8NDQ6 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
ZNF540Q8NDQ6 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
ZNF540Q8NDQ6 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
ZNF540Q8NDQ6 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
ZNF540Q8NDQ6 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
ZNF540Q8NDQ6 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC18.36■□□□□ 0.53
ZNF540Q8NDQ6 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
ZNF540Q8NDQ6 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
ZNF540Q8NDQ6 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC18.36■□□□□ 0.53
ZNF540Q8NDQ6 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
ZNF540Q8NDQ6 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
ZNF540Q8NDQ6 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC18.36■□□□□ 0.53
ZNF540Q8NDQ6 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC18.36■□□□□ 0.53
ZNF540Q8NDQ6 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
ZNF540Q8NDQ6 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
ZNF540Q8NDQ6 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC18.36■□□□□ 0.53
ZNF540Q8NDQ6 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
ZNF540Q8NDQ6 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
ZNF540Q8NDQ6 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
ZNF540Q8NDQ6 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
ZNF540Q8NDQ6 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
ZNF540Q8NDQ6 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
ZNF540Q8NDQ6 AL691432.2-201ENST00000607222 2038 ntBASIC18.35■□□□□ 0.53
ZNF540Q8NDQ6 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
ZNF540Q8NDQ6 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
ZNF540Q8NDQ6 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
ZNF540Q8NDQ6 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
ZNF540Q8NDQ6 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
ZNF540Q8NDQ6 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC18.35■□□□□ 0.53
ZNF540Q8NDQ6 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
ZNF540Q8NDQ6 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC18.35■□□□□ 0.53
ZNF540Q8NDQ6 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
ZNF540Q8NDQ6 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
ZNF540Q8NDQ6 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC18.35■□□□□ 0.53
ZNF540Q8NDQ6 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC18.35■□□□□ 0.53
ZNF540Q8NDQ6 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
ZNF540Q8NDQ6 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
ZNF540Q8NDQ6 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
ZNF540Q8NDQ6 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC18.35■□□□□ 0.53
ZNF540Q8NDQ6 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC18.35■□□□□ 0.53
ZNF540Q8NDQ6 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
ZNF540Q8NDQ6 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
ZNF540Q8NDQ6 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
ZNF540Q8NDQ6 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
ZNF540Q8NDQ6 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
ZNF540Q8NDQ6 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
ZNF540Q8NDQ6 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
ZNF540Q8NDQ6 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
ZNF540Q8NDQ6 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
ZNF540Q8NDQ6 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
ZNF540Q8NDQ6 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
ZNF540Q8NDQ6 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
ZNF540Q8NDQ6 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
ZNF540Q8NDQ6 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
ZNF540Q8NDQ6 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
ZNF540Q8NDQ6 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
ZNF540Q8NDQ6 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
ZNF540Q8NDQ6 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC18.34■□□□□ 0.53
ZNF540Q8NDQ6 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
ZNF540Q8NDQ6 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
ZNF540Q8NDQ6 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
ZNF540Q8NDQ6 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
ZNF540Q8NDQ6 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
ZNF540Q8NDQ6 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC18.34■□□□□ 0.53
ZNF540Q8NDQ6 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
ZNF540Q8NDQ6 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC18.34■□□□□ 0.53
ZNF540Q8NDQ6 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
ZNF540Q8NDQ6 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
ZNF540Q8NDQ6 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
ZNF540Q8NDQ6 AC004911.1-201ENST00000416316 871 ntBASIC18.34■□□□□ 0.53
ZNF540Q8NDQ6 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
ZNF540Q8NDQ6 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
ZNF540Q8NDQ6 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC18.34■□□□□ 0.53
ZNF540Q8NDQ6 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC18.34■□□□□ 0.53
ZNF540Q8NDQ6 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
ZNF540Q8NDQ6 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
ZNF540Q8NDQ6 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
ZNF540Q8NDQ6 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
ZNF540Q8NDQ6 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
ZNF540Q8NDQ6 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
ZNF540Q8NDQ6 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC18.34■□□□□ 0.53
ZNF540Q8NDQ6 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms