Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
HDDC3Q8N4P3 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
HDDC3Q8N4P3 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC20.01■□□□□ 0.79
HDDC3Q8N4P3 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
HDDC3Q8N4P3 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
HDDC3Q8N4P3 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
HDDC3Q8N4P3 BID-203ENST00000399765 1879 ntTSL 2 BASIC20.01■□□□□ 0.79
HDDC3Q8N4P3 HTR7P1-201ENST00000538670 1336 ntBASIC20.01■□□□□ 0.79
HDDC3Q8N4P3 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
HDDC3Q8N4P3 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
HDDC3Q8N4P3 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC20■□□□□ 0.79
HDDC3Q8N4P3 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
HDDC3Q8N4P3 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
HDDC3Q8N4P3 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
HDDC3Q8N4P3 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
HDDC3Q8N4P3 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
HDDC3Q8N4P3 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
HDDC3Q8N4P3 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
HDDC3Q8N4P3 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
HDDC3Q8N4P3 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
HDDC3Q8N4P3 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC20■□□□□ 0.79
HDDC3Q8N4P3 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC20■□□□□ 0.79
HDDC3Q8N4P3 NT5C-211ENST00000582170 653 ntTSL 3 BASIC20■□□□□ 0.79
HDDC3Q8N4P3 AC026471.5-201ENST00000615068 467 ntBASIC20■□□□□ 0.79
HDDC3Q8N4P3 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC20■□□□□ 0.79
HDDC3Q8N4P3 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC20■□□□□ 0.79
HDDC3Q8N4P3 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC20■□□□□ 0.79
HDDC3Q8N4P3 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
HDDC3Q8N4P3 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC20■□□□□ 0.79
HDDC3Q8N4P3 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
HDDC3Q8N4P3 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC19.99■□□□□ 0.79
HDDC3Q8N4P3 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC19.99■□□□□ 0.79
HDDC3Q8N4P3 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
HDDC3Q8N4P3 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
HDDC3Q8N4P3 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
HDDC3Q8N4P3 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC19.99■□□□□ 0.79
HDDC3Q8N4P3 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
HDDC3Q8N4P3 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
HDDC3Q8N4P3 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
HDDC3Q8N4P3 AL355355.2-201ENST00000442321 338 ntBASIC19.99■□□□□ 0.79
HDDC3Q8N4P3 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC19.99■□□□□ 0.79
HDDC3Q8N4P3 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC19.99■□□□□ 0.79
HDDC3Q8N4P3 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC19.99■□□□□ 0.79
HDDC3Q8N4P3 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC19.99■□□□□ 0.79
HDDC3Q8N4P3 AC004264.1-201ENST00000608354 794 ntBASIC19.99■□□□□ 0.79
HDDC3Q8N4P3 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC19.99■□□□□ 0.79
HDDC3Q8N4P3 AC092720.2-201ENST00000602388 1665 ntBASIC19.99■□□□□ 0.79
HDDC3Q8N4P3 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
HDDC3Q8N4P3 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC19.99■□□□□ 0.79
HDDC3Q8N4P3 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC19.99■□□□□ 0.79
HDDC3Q8N4P3 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
HDDC3Q8N4P3 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
HDDC3Q8N4P3 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC19.98■□□□□ 0.79
HDDC3Q8N4P3 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
HDDC3Q8N4P3 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
HDDC3Q8N4P3 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
HDDC3Q8N4P3 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC19.98■□□□□ 0.79
HDDC3Q8N4P3 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC19.98■□□□□ 0.79
HDDC3Q8N4P3 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
HDDC3Q8N4P3 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
HDDC3Q8N4P3 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
HDDC3Q8N4P3 CALM3-202ENST00000391918 702 ntTSL 2 BASIC19.98■□□□□ 0.79
HDDC3Q8N4P3 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
HDDC3Q8N4P3 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
HDDC3Q8N4P3 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
HDDC3Q8N4P3 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC19.98■□□□□ 0.79
HDDC3Q8N4P3 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
HDDC3Q8N4P3 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC19.98■□□□□ 0.79
HDDC3Q8N4P3 RN7SL850P-201ENST00000579959 291 ntBASIC19.98■□□□□ 0.79
HDDC3Q8N4P3 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
HDDC3Q8N4P3 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
HDDC3Q8N4P3 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
HDDC3Q8N4P3 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC19.98■□□□□ 0.79
HDDC3Q8N4P3 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC19.98■□□□□ 0.79
HDDC3Q8N4P3 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
HDDC3Q8N4P3 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
HDDC3Q8N4P3 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
HDDC3Q8N4P3 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
HDDC3Q8N4P3 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC19.97■□□□□ 0.79
HDDC3Q8N4P3 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
HDDC3Q8N4P3 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
HDDC3Q8N4P3 MMP23A-201ENST00000234610 1017 ntBASIC19.97■□□□□ 0.79
HDDC3Q8N4P3 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
HDDC3Q8N4P3 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
HDDC3Q8N4P3 KRT18P35-201ENST00000510488 1269 ntBASIC19.97■□□□□ 0.79
HDDC3Q8N4P3 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC19.97■□□□□ 0.79
HDDC3Q8N4P3 AP003071.4-201ENST00000562276 1284 ntBASIC19.97■□□□□ 0.79
HDDC3Q8N4P3 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
HDDC3Q8N4P3 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
HDDC3Q8N4P3 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC19.97■□□□□ 0.79
HDDC3Q8N4P3 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC19.97■□□□□ 0.79
HDDC3Q8N4P3 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
HDDC3Q8N4P3 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
HDDC3Q8N4P3 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
HDDC3Q8N4P3 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
HDDC3Q8N4P3 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
HDDC3Q8N4P3 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC19.97■□□□□ 0.79
HDDC3Q8N4P3 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC19.97■□□□□ 0.79
HDDC3Q8N4P3 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
HDDC3Q8N4P3 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms