Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
FOXA3P55318 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
FOXA3P55318 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC14.92□□□□□ -0.02
FOXA3P55318 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
FOXA3P55318 ADK-206ENST00000541550 2222 ntTSL 2 BASIC14.92□□□□□ -0.02
FOXA3P55318 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
FOXA3P55318 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
FOXA3P55318 STK25-204ENST00000405585 1643 ntTSL 2 BASIC14.92□□□□□ -0.02
FOXA3P55318 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC14.92□□□□□ -0.02
FOXA3P55318 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
FOXA3P55318 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC14.91□□□□□ -0.02
FOXA3P55318 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
FOXA3P55318 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC14.91□□□□□ -0.02
FOXA3P55318 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
FOXA3P55318 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC14.91□□□□□ -0.02
FOXA3P55318 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
FOXA3P55318 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
FOXA3P55318 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
FOXA3P55318 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
FOXA3P55318 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
FOXA3P55318 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC14.91□□□□□ -0.02
FOXA3P55318 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC14.91□□□□□ -0.02
FOXA3P55318 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
FOXA3P55318 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
FOXA3P55318 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
FOXA3P55318 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
FOXA3P55318 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC14.91□□□□□ -0.02
FOXA3P55318 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
FOXA3P55318 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
FOXA3P55318 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
FOXA3P55318 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
FOXA3P55318 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
FOXA3P55318 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
FOXA3P55318 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
FOXA3P55318 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC14.9□□□□□ -0.02
FOXA3P55318 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
FOXA3P55318 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC14.9□□□□□ -0.02
FOXA3P55318 AC061975.6-201ENST00000579045 1553 ntBASIC14.9□□□□□ -0.02
FOXA3P55318 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC14.9□□□□□ -0.02
FOXA3P55318 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
FOXA3P55318 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
FOXA3P55318 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
FOXA3P55318 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
FOXA3P55318 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
FOXA3P55318 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
FOXA3P55318 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
FOXA3P55318 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC14.9□□□□□ -0.02
FOXA3P55318 KRT16P3-201ENST00000439127 1283 ntBASIC14.9□□□□□ -0.02
FOXA3P55318 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC14.9□□□□□ -0.02
FOXA3P55318 MIR3621-201ENST00000580529 85 ntBASIC14.9□□□□□ -0.02
FOXA3P55318 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC14.9□□□□□ -0.02
FOXA3P55318 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
FOXA3P55318 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
FOXA3P55318 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
FOXA3P55318 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
FOXA3P55318 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
FOXA3P55318 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
FOXA3P55318 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
FOXA3P55318 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
FOXA3P55318 WAC-202ENST00000347934 2839 ntTSL 5 BASIC14.9□□□□□ -0.02
FOXA3P55318 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC14.9□□□□□ -0.02
FOXA3P55318 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
FOXA3P55318 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC14.9□□□□□ -0.02
FOXA3P55318 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
FOXA3P55318 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
FOXA3P55318 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
FOXA3P55318 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC14.89□□□□□ -0.03
FOXA3P55318 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
FOXA3P55318 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
FOXA3P55318 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
FOXA3P55318 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
FOXA3P55318 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC14.89□□□□□ -0.03
FOXA3P55318 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC14.89□□□□□ -0.03
FOXA3P55318 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
FOXA3P55318 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
FOXA3P55318 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
FOXA3P55318 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
FOXA3P55318 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
FOXA3P55318 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
FOXA3P55318 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
FOXA3P55318 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC14.89□□□□□ -0.03
FOXA3P55318 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
FOXA3P55318 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC14.89□□□□□ -0.03
FOXA3P55318 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC14.89□□□□□ -0.03
FOXA3P55318 AL049812.1-201ENST00000432563 2267 ntBASIC14.89□□□□□ -0.03
FOXA3P55318 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
FOXA3P55318 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
FOXA3P55318 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
FOXA3P55318 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
FOXA3P55318 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
FOXA3P55318 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC14.88□□□□□ -0.03
FOXA3P55318 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
FOXA3P55318 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
FOXA3P55318 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
FOXA3P55318 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
FOXA3P55318 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
FOXA3P55318 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
FOXA3P55318 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
FOXA3P55318 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
FOXA3P55318 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms