Protein–RNA interactions for Protein: P28702

RXRB, Retinoic acid receptor RXR-beta, humanhuman

Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RXRBP28702 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC26.33■■□□□ 1.81
RXRBP28702 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
RXRBP28702 PPIH-202ENST00000372549 327 ntTSL 3 BASIC26.33■■□□□ 1.81
RXRBP28702 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC26.33■■□□□ 1.81
RXRBP28702 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC26.33■■□□□ 1.81
RXRBP28702 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC26.33■■□□□ 1.81
RXRBP28702 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC26.33■■□□□ 1.81
RXRBP28702 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
RXRBP28702 AC093323.1-202ENST00000635031 2045 ntBASIC26.32■■□□□ 1.8
RXRBP28702 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC26.32■■□□□ 1.8
RXRBP28702 GCA-201ENST00000233612 1694 ntTSL 2 BASIC26.32■■□□□ 1.8
RXRBP28702 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC26.32■■□□□ 1.8
RXRBP28702 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC26.32■■□□□ 1.8
RXRBP28702 AC004951.3-201ENST00000418645 1148 ntBASIC26.32■■□□□ 1.8
RXRBP28702 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
RXRBP28702 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC26.32■■□□□ 1.8
RXRBP28702 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC26.32■■□□□ 1.8
RXRBP28702 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC26.31■■□□□ 1.8
RXRBP28702 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
RXRBP28702 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC26.31■■□□□ 1.8
RXRBP28702 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC26.31■■□□□ 1.8
RXRBP28702 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
RXRBP28702 NUS1P1-201ENST00000446295 882 ntBASIC26.31■■□□□ 1.8
RXRBP28702 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC26.31■■□□□ 1.8
RXRBP28702 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC26.31■■□□□ 1.8
RXRBP28702 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC26.31■■□□□ 1.8
RXRBP28702 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC26.31■■□□□ 1.8
RXRBP28702 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC26.31■■□□□ 1.8
RXRBP28702 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC26.31■■□□□ 1.8
RXRBP28702 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
RXRBP28702 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
RXRBP28702 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC26.3■■□□□ 1.8
RXRBP28702 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
RXRBP28702 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
RXRBP28702 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC26.3■■□□□ 1.8
RXRBP28702 AC079781.3-201ENST00000449110 356 ntBASIC26.3■■□□□ 1.8
RXRBP28702 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC26.3■■□□□ 1.8
RXRBP28702 AC106795.1-205ENST00000512851 1056 ntBASIC26.3■■□□□ 1.8
RXRBP28702 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC26.3■■□□□ 1.8
RXRBP28702 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC26.3■■□□□ 1.8
RXRBP28702 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC26.3■■□□□ 1.8
RXRBP28702 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
RXRBP28702 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
RXRBP28702 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC26.29■■□□□ 1.8
RXRBP28702 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC26.29■■□□□ 1.8
RXRBP28702 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC26.29■■□□□ 1.8
RXRBP28702 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC26.29■■□□□ 1.8
RXRBP28702 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
RXRBP28702 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC26.29■■□□□ 1.8
RXRBP28702 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC26.29■■□□□ 1.8
RXRBP28702 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
RXRBP28702 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
RXRBP28702 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
RXRBP28702 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC26.29■■□□□ 1.8
RXRBP28702 YBX1P10-201ENST00000444752 975 ntBASIC26.29■■□□□ 1.8
RXRBP28702 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC26.29■■□□□ 1.8
RXRBP28702 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC26.29■■□□□ 1.8
RXRBP28702 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC26.29■■□□□ 1.8
RXRBP28702 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
RXRBP28702 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC26.29■■□□□ 1.8
RXRBP28702 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC26.29■■□□□ 1.8
RXRBP28702 AP006587.1-201ENST00000534129 1502 ntBASIC26.29■■□□□ 1.8
RXRBP28702 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC26.28■■□□□ 1.8
RXRBP28702 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC26.28■■□□□ 1.8
RXRBP28702 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
RXRBP28702 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
RXRBP28702 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC26.28■■□□□ 1.8
RXRBP28702 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
RXRBP28702 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
RXRBP28702 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC26.28■■□□□ 1.8
RXRBP28702 STARP1-201ENST00000397973 869 ntBASIC26.28■■□□□ 1.8
RXRBP28702 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC26.28■■□□□ 1.8
RXRBP28702 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC26.28■■□□□ 1.8
RXRBP28702 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC26.28■■□□□ 1.8
RXRBP28702 MIR3180-1-201ENST00000580374 94 ntBASIC26.28■■□□□ 1.8
RXRBP28702 MIR3180-3-201ENST00000584616 94 ntBASIC26.28■■□□□ 1.8
RXRBP28702 SLC25A6P4-201ENST00000586535 553 ntBASIC26.28■■□□□ 1.8
RXRBP28702 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC26.28■■□□□ 1.8
RXRBP28702 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
RXRBP28702 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC26.28■■□□□ 1.8
RXRBP28702 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC26.27■■□□□ 1.8
RXRBP28702 TEX30-205ENST00000376029 959 ntTSL 2 BASIC26.27■■□□□ 1.8
RXRBP28702 HLA-G-202ENST00000376815 851 ntBASIC26.27■■□□□ 1.8
RXRBP28702 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC26.27■■□□□ 1.8
RXRBP28702 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC26.27■■□□□ 1.8
RXRBP28702 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
RXRBP28702 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC26.27■■□□□ 1.8
RXRBP28702 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
RXRBP28702 EXOC3-AS1-202ENST00000623673 1663 ntBASIC26.27■■□□□ 1.8
RXRBP28702 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
RXRBP28702 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC26.26■■□□□ 1.79
RXRBP28702 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
RXRBP28702 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
RXRBP28702 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
RXRBP28702 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
RXRBP28702 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC26.26■■□□□ 1.79
RXRBP28702 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
RXRBP28702 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC26.26■■□□□ 1.79
RXRBP28702 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC26.26■■□□□ 1.79
RXRBP28702 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC26.26■■□□□ 1.79
Retrieved 100 of 98,524 protein–RNA pairs in 49.6 ms