Protein–RNA interactions for Protein: O96005

CLPTM1, Cleft lip and palate transmembrane protein 1, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLPTM1O96005 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC18.72■□□□□ 0.59
CLPTM1O96005 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CLPTM1O96005 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CLPTM1O96005 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC18.72■□□□□ 0.59
CLPTM1O96005 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CLPTM1O96005 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CLPTM1O96005 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CLPTM1O96005 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CLPTM1O96005 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CLPTM1O96005 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CLPTM1O96005 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC18.72■□□□□ 0.59
CLPTM1O96005 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CLPTM1O96005 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC18.71■□□□□ 0.59
CLPTM1O96005 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
CLPTM1O96005 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CLPTM1O96005 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
CLPTM1O96005 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CLPTM1O96005 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CLPTM1O96005 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
CLPTM1O96005 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
CLPTM1O96005 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
CLPTM1O96005 AC010141.3-201ENST00000456659 717 ntBASIC18.71■□□□□ 0.59
CLPTM1O96005 AC087239.1-201ENST00000622671 572 ntBASIC18.71■□□□□ 0.59
CLPTM1O96005 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
CLPTM1O96005 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CLPTM1O96005 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CLPTM1O96005 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
CLPTM1O96005 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC18.71■□□□□ 0.59
CLPTM1O96005 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC18.71■□□□□ 0.59
CLPTM1O96005 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CLPTM1O96005 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC18.71■□□□□ 0.58
CLPTM1O96005 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
CLPTM1O96005 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLPTM1O96005 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLPTM1O96005 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLPTM1O96005 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CLPTM1O96005 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
CLPTM1O96005 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLPTM1O96005 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLPTM1O96005 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC18.7■□□□□ 0.58
CLPTM1O96005 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC18.7■□□□□ 0.58
CLPTM1O96005 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLPTM1O96005 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLPTM1O96005 MIR935-201ENST00000401179 91 ntBASIC18.7■□□□□ 0.58
CLPTM1O96005 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CLPTM1O96005 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLPTM1O96005 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLPTM1O96005 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLPTM1O96005 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLPTM1O96005 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC18.7■□□□□ 0.58
CLPTM1O96005 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC18.7■□□□□ 0.58
CLPTM1O96005 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC18.7■□□□□ 0.58
CLPTM1O96005 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
CLPTM1O96005 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLPTM1O96005 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLPTM1O96005 AIRN-201ENST00000601203 4374 ntBASIC18.69■□□□□ 0.58
CLPTM1O96005 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
CLPTM1O96005 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLPTM1O96005 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLPTM1O96005 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLPTM1O96005 MIR572-201ENST00000384983 95 ntBASIC18.69■□□□□ 0.58
CLPTM1O96005 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CLPTM1O96005 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC18.69■□□□□ 0.58
CLPTM1O96005 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC18.69■□□□□ 0.58
CLPTM1O96005 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLPTM1O96005 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC18.69■□□□□ 0.58
CLPTM1O96005 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC18.69■□□□□ 0.58
CLPTM1O96005 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CLPTM1O96005 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLPTM1O96005 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLPTM1O96005 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLPTM1O96005 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLPTM1O96005 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC18.68■□□□□ 0.58
CLPTM1O96005 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CLPTM1O96005 TMEM179-206ENST00000616017 1645 ntBASIC18.68■□□□□ 0.58
CLPTM1O96005 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLPTM1O96005 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLPTM1O96005 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CLPTM1O96005 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC18.68■□□□□ 0.58
CLPTM1O96005 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLPTM1O96005 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
CLPTM1O96005 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
CLPTM1O96005 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
CLPTM1O96005 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLPTM1O96005 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CLPTM1O96005 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC18.68■□□□□ 0.58
CLPTM1O96005 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC18.68■□□□□ 0.58
CLPTM1O96005 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
CLPTM1O96005 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLPTM1O96005 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
CLPTM1O96005 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
CLPTM1O96005 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLPTM1O96005 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLPTM1O96005 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC18.68■□□□□ 0.58
CLPTM1O96005 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CLPTM1O96005 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLPTM1O96005 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
CLPTM1O96005 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLPTM1O96005 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLPTM1O96005 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms