Protein–RNA interactions for Protein: O75400

PRPF40A, Pre-mRNA-processing factor 40 homolog A, humanhuman

Known RBP Predictions only

Length 957 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40AO75400 DUX4L7-201ENST00000630678 1275 ntBASIC23.09■■□□□ 1.29
PRPF40AO75400 DUX4L5-201ENST00000630834 1275 ntBASIC23.09■■□□□ 1.29
PRPF40AO75400 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC23.09■■□□□ 1.29
PRPF40AO75400 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
PRPF40AO75400 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC23.09■■□□□ 1.29
PRPF40AO75400 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC23.09■■□□□ 1.29
PRPF40AO75400 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
PRPF40AO75400 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC23.08■■□□□ 1.29
PRPF40AO75400 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC23.08■■□□□ 1.29
PRPF40AO75400 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC23.08■■□□□ 1.29
PRPF40AO75400 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC23.08■■□□□ 1.29
PRPF40AO75400 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
PRPF40AO75400 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC23.08■■□□□ 1.29
PRPF40AO75400 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC23.08■■□□□ 1.29
PRPF40AO75400 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC23.08■■□□□ 1.29
PRPF40AO75400 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC23.08■■□□□ 1.29
PRPF40AO75400 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC23.08■■□□□ 1.29
PRPF40AO75400 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
PRPF40AO75400 AC091799.1-201ENST00000422823 811 ntBASIC23.08■■□□□ 1.29
PRPF40AO75400 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC23.08■■□□□ 1.29
PRPF40AO75400 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
PRPF40AO75400 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
PRPF40AO75400 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC23.08■■□□□ 1.29
PRPF40AO75400 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC23.08■■□□□ 1.28
PRPF40AO75400 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
PRPF40AO75400 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
PRPF40AO75400 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
PRPF40AO75400 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
PRPF40AO75400 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
PRPF40AO75400 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC23.07■■□□□ 1.28
PRPF40AO75400 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
PRPF40AO75400 KRT18P14-201ENST00000534205 1250 ntBASIC23.07■■□□□ 1.28
PRPF40AO75400 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC23.07■■□□□ 1.28
PRPF40AO75400 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC23.07■■□□□ 1.28
PRPF40AO75400 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC23.07■■□□□ 1.28
PRPF40AO75400 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC23.07■■□□□ 1.28
PRPF40AO75400 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC23.07■■□□□ 1.28
PRPF40AO75400 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
PRPF40AO75400 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC23.07■■□□□ 1.28
PRPF40AO75400 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC23.07■■□□□ 1.28
PRPF40AO75400 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC23.06■■□□□ 1.28
PRPF40AO75400 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
PRPF40AO75400 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
PRPF40AO75400 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
PRPF40AO75400 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC23.06■■□□□ 1.28
PRPF40AO75400 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
PRPF40AO75400 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
PRPF40AO75400 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
PRPF40AO75400 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC23.06■■□□□ 1.28
PRPF40AO75400 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC23.06■■□□□ 1.28
PRPF40AO75400 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC23.06■■□□□ 1.28
PRPF40AO75400 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
PRPF40AO75400 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC23.06■■□□□ 1.28
PRPF40AO75400 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC23.06■■□□□ 1.28
PRPF40AO75400 GLI3-203ENST00000437480 451 ntTSL 2 BASIC23.06■■□□□ 1.28
PRPF40AO75400 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC23.06■■□□□ 1.28
PRPF40AO75400 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC23.06■■□□□ 1.28
PRPF40AO75400 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC23.06■■□□□ 1.28
PRPF40AO75400 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
PRPF40AO75400 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC23.05■■□□□ 1.28
PRPF40AO75400 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
PRPF40AO75400 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
PRPF40AO75400 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
PRPF40AO75400 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC23.05■■□□□ 1.28
PRPF40AO75400 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
PRPF40AO75400 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC23.05■■□□□ 1.28
PRPF40AO75400 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC23.05■■□□□ 1.28
PRPF40AO75400 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
PRPF40AO75400 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
PRPF40AO75400 AC007322.3-201ENST00000426526 701 ntBASIC23.05■■□□□ 1.28
PRPF40AO75400 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC23.05■■□□□ 1.28
PRPF40AO75400 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
PRPF40AO75400 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC23.05■■□□□ 1.28
PRPF40AO75400 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
PRPF40AO75400 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC23.05■■□□□ 1.28
PRPF40AO75400 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
PRPF40AO75400 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
PRPF40AO75400 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
PRPF40AO75400 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
PRPF40AO75400 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
PRPF40AO75400 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
PRPF40AO75400 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
PRPF40AO75400 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC23.04■■□□□ 1.28
PRPF40AO75400 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC23.04■■□□□ 1.28
PRPF40AO75400 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC23.04■■□□□ 1.28
PRPF40AO75400 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC23.04■■□□□ 1.28
PRPF40AO75400 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC23.04■■□□□ 1.28
PRPF40AO75400 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC23.04■■□□□ 1.28
PRPF40AO75400 TP73-202ENST00000354437 2140 ntTSL 5 BASIC23.04■■□□□ 1.28
PRPF40AO75400 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC23.04■■□□□ 1.28
PRPF40AO75400 KRT18P5-201ENST00000436075 1291 ntBASIC23.04■■□□□ 1.28
PRPF40AO75400 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC23.04■■□□□ 1.28
PRPF40AO75400 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC23.04■■□□□ 1.28
PRPF40AO75400 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC23.04■■□□□ 1.28
PRPF40AO75400 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
PRPF40AO75400 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
PRPF40AO75400 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
PRPF40AO75400 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC23.04■■□□□ 1.28
PRPF40AO75400 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC23.04■■□□□ 1.28
PRPF40AO75400 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC23.04■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms