Protein–RNA interactions for Protein: O60858

TRIM13, E3 ubiquitin-protein ligase TRIM13, humanhuman

Predictions only

Length 407 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM13O60858 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
TRIM13O60858 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC19.56■□□□□ 0.72
TRIM13O60858 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
TRIM13O60858 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
TRIM13O60858 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
TRIM13O60858 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
TRIM13O60858 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
TRIM13O60858 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC19.56■□□□□ 0.72
TRIM13O60858 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
TRIM13O60858 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
TRIM13O60858 AC004408.2-201ENST00000623613 2777 ntBASIC19.55■□□□□ 0.72
TRIM13O60858 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
TRIM13O60858 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
TRIM13O60858 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
TRIM13O60858 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
TRIM13O60858 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
TRIM13O60858 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
TRIM13O60858 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
TRIM13O60858 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC19.55■□□□□ 0.72
TRIM13O60858 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC19.55■□□□□ 0.72
TRIM13O60858 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
TRIM13O60858 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
TRIM13O60858 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
TRIM13O60858 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
TRIM13O60858 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
TRIM13O60858 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
TRIM13O60858 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
TRIM13O60858 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
TRIM13O60858 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
TRIM13O60858 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
TRIM13O60858 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC19.55■□□□□ 0.72
TRIM13O60858 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC19.55■□□□□ 0.72
TRIM13O60858 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
TRIM13O60858 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC19.55■□□□□ 0.72
TRIM13O60858 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
TRIM13O60858 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC19.54■□□□□ 0.72
TRIM13O60858 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
TRIM13O60858 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
TRIM13O60858 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC19.54■□□□□ 0.72
TRIM13O60858 KRT16P6-202ENST00000425692 1426 ntBASIC19.54■□□□□ 0.72
TRIM13O60858 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
TRIM13O60858 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC19.54■□□□□ 0.72
TRIM13O60858 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
TRIM13O60858 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC19.54■□□□□ 0.72
TRIM13O60858 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
TRIM13O60858 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC19.54■□□□□ 0.72
TRIM13O60858 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC19.54■□□□□ 0.72
TRIM13O60858 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC19.54■□□□□ 0.72
TRIM13O60858 AL162412.1-201ENST00000567129 965 ntBASIC19.54■□□□□ 0.72
TRIM13O60858 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
TRIM13O60858 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC19.54■□□□□ 0.72
TRIM13O60858 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC19.54■□□□□ 0.72
TRIM13O60858 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC19.54■□□□□ 0.72
TRIM13O60858 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
TRIM13O60858 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
TRIM13O60858 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC19.54■□□□□ 0.72
TRIM13O60858 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
TRIM13O60858 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
TRIM13O60858 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
TRIM13O60858 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
TRIM13O60858 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
TRIM13O60858 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC19.53■□□□□ 0.72
TRIM13O60858 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC19.53■□□□□ 0.72
TRIM13O60858 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
TRIM13O60858 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
TRIM13O60858 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
TRIM13O60858 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC19.53■□□□□ 0.72
TRIM13O60858 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC19.53■□□□□ 0.72
TRIM13O60858 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
TRIM13O60858 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
TRIM13O60858 MIR638-201ENST00000385237 100 ntBASIC19.53■□□□□ 0.72
TRIM13O60858 PBX1-209ENST00000485769 834 ntTSL 2 BASIC19.53■□□□□ 0.72
TRIM13O60858 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC19.53■□□□□ 0.72
TRIM13O60858 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC19.53■□□□□ 0.72
TRIM13O60858 AC010536.3-201ENST00000620306 533 ntBASIC19.53■□□□□ 0.72
TRIM13O60858 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
TRIM13O60858 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC19.53■□□□□ 0.72
TRIM13O60858 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
TRIM13O60858 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
TRIM13O60858 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC19.53■□□□□ 0.72
TRIM13O60858 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
TRIM13O60858 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
TRIM13O60858 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC19.53■□□□□ 0.72
TRIM13O60858 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
TRIM13O60858 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
TRIM13O60858 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC19.52■□□□□ 0.72
TRIM13O60858 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
TRIM13O60858 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
TRIM13O60858 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
TRIM13O60858 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC19.52■□□□□ 0.72
TRIM13O60858 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC19.52■□□□□ 0.72
TRIM13O60858 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
TRIM13O60858 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC19.52■□□□□ 0.72
TRIM13O60858 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
TRIM13O60858 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
TRIM13O60858 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
TRIM13O60858 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
TRIM13O60858 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
TRIM13O60858 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
TRIM13O60858 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 67.7 ms