Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TCRBV7S3A2A0A539 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TCRBV7S3A2A0A539 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TCRBV7S3A2A0A539 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TCRBV7S3A2A0A539 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TCRBV7S3A2A0A539 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
TCRBV7S3A2A0A539 AC004911.1-201ENST00000416316 871 ntBASIC20.23■□□□□ 0.83
TCRBV7S3A2A0A539 AC007322.1-201ENST00000426983 750 ntBASIC20.23■□□□□ 0.83
TCRBV7S3A2A0A539 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TCRBV7S3A2A0A539 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC20.23■□□□□ 0.83
TCRBV7S3A2A0A539 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC20.23■□□□□ 0.83
TCRBV7S3A2A0A539 AC069236.1-201ENST00000604339 616 ntBASIC20.23■□□□□ 0.83
TCRBV7S3A2A0A539 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC20.23■□□□□ 0.83
TCRBV7S3A2A0A539 AC231657.2-201ENST00000624556 255 ntBASIC20.23■□□□□ 0.83
TCRBV7S3A2A0A539 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC20.23■□□□□ 0.83
TCRBV7S3A2A0A539 STK25-204ENST00000405585 1643 ntTSL 2 BASIC20.23■□□□□ 0.83
TCRBV7S3A2A0A539 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
TCRBV7S3A2A0A539 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC20.23■□□□□ 0.83
TCRBV7S3A2A0A539 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
TCRBV7S3A2A0A539 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
TCRBV7S3A2A0A539 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC20.23■□□□□ 0.83
TCRBV7S3A2A0A539 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC20.23■□□□□ 0.83
TCRBV7S3A2A0A539 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC20.22■□□□□ 0.83
TCRBV7S3A2A0A539 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
TCRBV7S3A2A0A539 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TCRBV7S3A2A0A539 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
TCRBV7S3A2A0A539 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TCRBV7S3A2A0A539 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TCRBV7S3A2A0A539 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TCRBV7S3A2A0A539 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
TCRBV7S3A2A0A539 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
TCRBV7S3A2A0A539 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC20.22■□□□□ 0.83
TCRBV7S3A2A0A539 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
TCRBV7S3A2A0A539 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TCRBV7S3A2A0A539 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
TCRBV7S3A2A0A539 AP000974.1-201ENST00000623909 2387 ntBASIC20.22■□□□□ 0.83
TCRBV7S3A2A0A539 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
TCRBV7S3A2A0A539 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
TCRBV7S3A2A0A539 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TCRBV7S3A2A0A539 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
TCRBV7S3A2A0A539 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
TCRBV7S3A2A0A539 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
TCRBV7S3A2A0A539 KRT16P6-202ENST00000425692 1426 ntBASIC20.21■□□□□ 0.83
TCRBV7S3A2A0A539 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC20.21■□□□□ 0.83
TCRBV7S3A2A0A539 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC20.21■□□□□ 0.83
TCRBV7S3A2A0A539 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TCRBV7S3A2A0A539 BET1L-204ENST00000410108 637 ntTSL 3 BASIC20.21■□□□□ 0.83
TCRBV7S3A2A0A539 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC20.21■□□□□ 0.83
TCRBV7S3A2A0A539 AC022517.1-201ENST00000592429 346 ntBASIC20.21■□□□□ 0.83
TCRBV7S3A2A0A539 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TCRBV7S3A2A0A539 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
TCRBV7S3A2A0A539 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TCRBV7S3A2A0A539 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
TCRBV7S3A2A0A539 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC20.21■□□□□ 0.83
TCRBV7S3A2A0A539 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TCRBV7S3A2A0A539 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC20.21■□□□□ 0.83
TCRBV7S3A2A0A539 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC20.21■□□□□ 0.83
TCRBV7S3A2A0A539 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.83
TCRBV7S3A2A0A539 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
TCRBV7S3A2A0A539 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC20.2■□□□□ 0.82
TCRBV7S3A2A0A539 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC20.2■□□□□ 0.82
TCRBV7S3A2A0A539 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TCRBV7S3A2A0A539 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TCRBV7S3A2A0A539 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TCRBV7S3A2A0A539 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TCRBV7S3A2A0A539 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
TCRBV7S3A2A0A539 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC20.2■□□□□ 0.82
TCRBV7S3A2A0A539 AC008694.1-202ENST00000636953 945 ntBASIC20.2■□□□□ 0.82
TCRBV7S3A2A0A539 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC20.2■□□□□ 0.82
TCRBV7S3A2A0A539 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
TCRBV7S3A2A0A539 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC20.2■□□□□ 0.82
TCRBV7S3A2A0A539 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
TCRBV7S3A2A0A539 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
TCRBV7S3A2A0A539 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC20.2■□□□□ 0.82
TCRBV7S3A2A0A539 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC20.2■□□□□ 0.82
TCRBV7S3A2A0A539 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
TCRBV7S3A2A0A539 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
TCRBV7S3A2A0A539 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TCRBV7S3A2A0A539 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
TCRBV7S3A2A0A539 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
TCRBV7S3A2A0A539 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC20.19■□□□□ 0.82
TCRBV7S3A2A0A539 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
TCRBV7S3A2A0A539 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TCRBV7S3A2A0A539 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
TCRBV7S3A2A0A539 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
TCRBV7S3A2A0A539 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC20.19■□□□□ 0.82
TCRBV7S3A2A0A539 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TCRBV7S3A2A0A539 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TCRBV7S3A2A0A539 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
TCRBV7S3A2A0A539 TP73-202ENST00000354437 2140 ntTSL 5 BASIC20.19■□□□□ 0.82
TCRBV7S3A2A0A539 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC20.19■□□□□ 0.82
TCRBV7S3A2A0A539 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC20.19■□□□□ 0.82
TCRBV7S3A2A0A539 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC20.19■□□□□ 0.82
TCRBV7S3A2A0A539 C2orf69P4-201ENST00000565394 541 ntBASIC20.19■□□□□ 0.82
TCRBV7S3A2A0A539 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC20.19■□□□□ 0.82
TCRBV7S3A2A0A539 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC20.19■□□□□ 0.82
TCRBV7S3A2A0A539 OR10C1-204ENST00000622521 1039 ntBASIC20.19■□□□□ 0.82
TCRBV7S3A2A0A539 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
TCRBV7S3A2A0A539 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC20.19■□□□□ 0.82
TCRBV7S3A2A0A539 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 59.1 ms