Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
SMIM28A0A1B0GU29 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC21.39■■□□□ 1.02
SMIM28A0A1B0GU29 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.02
SMIM28A0A1B0GU29 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC21.39■■□□□ 1.01
SMIM28A0A1B0GU29 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC21.39■■□□□ 1.01
SMIM28A0A1B0GU29 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC21.39■■□□□ 1.01
SMIM28A0A1B0GU29 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC21.39■■□□□ 1.01
SMIM28A0A1B0GU29 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC21.39■■□□□ 1.01
SMIM28A0A1B0GU29 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
SMIM28A0A1B0GU29 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC21.39■■□□□ 1.01
SMIM28A0A1B0GU29 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC21.39■■□□□ 1.01
SMIM28A0A1B0GU29 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
SMIM28A0A1B0GU29 AP001412.1-201ENST00000608405 714 ntBASIC21.39■■□□□ 1.01
SMIM28A0A1B0GU29 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC21.39■■□□□ 1.01
SMIM28A0A1B0GU29 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
SMIM28A0A1B0GU29 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.01
SMIM28A0A1B0GU29 FEM1AP1-201ENST00000431297 1995 ntBASIC21.39■■□□□ 1.01
SMIM28A0A1B0GU29 BX119927.1-201ENST00000636596 1552 ntBASIC21.39■■□□□ 1.01
SMIM28A0A1B0GU29 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.01
SMIM28A0A1B0GU29 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
SMIM28A0A1B0GU29 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC21.39■■□□□ 1.01
SMIM28A0A1B0GU29 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
SMIM28A0A1B0GU29 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
SMIM28A0A1B0GU29 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SMIM28A0A1B0GU29 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC21.38■■□□□ 1.01
SMIM28A0A1B0GU29 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SMIM28A0A1B0GU29 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SMIM28A0A1B0GU29 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SMIM28A0A1B0GU29 HTR7P1-201ENST00000538670 1336 ntBASIC21.38■■□□□ 1.01
SMIM28A0A1B0GU29 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SMIM28A0A1B0GU29 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
SMIM28A0A1B0GU29 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
SMIM28A0A1B0GU29 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SMIM28A0A1B0GU29 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SMIM28A0A1B0GU29 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC21.38■■□□□ 1.01
SMIM28A0A1B0GU29 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC21.38■■□□□ 1.01
SMIM28A0A1B0GU29 AC004264.1-201ENST00000608354 794 ntBASIC21.38■■□□□ 1.01
SMIM28A0A1B0GU29 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC21.38■■□□□ 1.01
SMIM28A0A1B0GU29 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SMIM28A0A1B0GU29 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
SMIM28A0A1B0GU29 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
SMIM28A0A1B0GU29 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC21.38■■□□□ 1.01
SMIM28A0A1B0GU29 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SMIM28A0A1B0GU29 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
SMIM28A0A1B0GU29 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC21.38■■□□□ 1.01
SMIM28A0A1B0GU29 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
SMIM28A0A1B0GU29 PHGDH-210ENST00000641115 1638 ntBASIC21.37■■□□□ 1.01
SMIM28A0A1B0GU29 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC21.37■■□□□ 1.01
SMIM28A0A1B0GU29 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
SMIM28A0A1B0GU29 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SMIM28A0A1B0GU29 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC21.37■■□□□ 1.01
SMIM28A0A1B0GU29 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC21.37■■□□□ 1.01
SMIM28A0A1B0GU29 AC113410.3-201ENST00000623366 203 ntBASIC21.37■■□□□ 1.01
SMIM28A0A1B0GU29 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC21.37■■□□□ 1.01
SMIM28A0A1B0GU29 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
SMIM28A0A1B0GU29 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC21.37■■□□□ 1.01
SMIM28A0A1B0GU29 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
SMIM28A0A1B0GU29 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC21.37■■□□□ 1.01
SMIM28A0A1B0GU29 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC21.37■■□□□ 1.01
SMIM28A0A1B0GU29 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
SMIM28A0A1B0GU29 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
SMIM28A0A1B0GU29 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC21.36■■□□□ 1.01
SMIM28A0A1B0GU29 AL512408.1-201ENST00000569378 2000 ntBASIC21.36■■□□□ 1.01
SMIM28A0A1B0GU29 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
SMIM28A0A1B0GU29 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
SMIM28A0A1B0GU29 TSPY7P-201ENST00000431358 1114 ntBASIC21.36■■□□□ 1.01
SMIM28A0A1B0GU29 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC21.36■■□□□ 1.01
SMIM28A0A1B0GU29 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC21.36■■□□□ 1.01
SMIM28A0A1B0GU29 AF186192.3-201ENST00000583427 947 ntBASIC21.36■■□□□ 1.01
SMIM28A0A1B0GU29 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC21.36■■□□□ 1.01
SMIM28A0A1B0GU29 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC21.36■■□□□ 1.01
SMIM28A0A1B0GU29 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC21.36■■□□□ 1.01
SMIM28A0A1B0GU29 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC21.36■■□□□ 1.01
SMIM28A0A1B0GU29 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
SMIM28A0A1B0GU29 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
SMIM28A0A1B0GU29 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC21.36■■□□□ 1.01
SMIM28A0A1B0GU29 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SMIM28A0A1B0GU29 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
SMIM28A0A1B0GU29 AP006587.1-201ENST00000534129 1502 ntBASIC21.35■■□□□ 1.01
SMIM28A0A1B0GU29 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
SMIM28A0A1B0GU29 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SMIM28A0A1B0GU29 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC21.35■■□□□ 1.01
SMIM28A0A1B0GU29 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
SMIM28A0A1B0GU29 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SMIM28A0A1B0GU29 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC21.35■■□□□ 1.01
SMIM28A0A1B0GU29 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SMIM28A0A1B0GU29 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
SMIM28A0A1B0GU29 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC21.35■■□□□ 1.01
SMIM28A0A1B0GU29 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SMIM28A0A1B0GU29 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC21.35■■□□□ 1.01
SMIM28A0A1B0GU29 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SMIM28A0A1B0GU29 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC21.35■■□□□ 1.01
SMIM28A0A1B0GU29 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
SMIM28A0A1B0GU29 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC21.35■■□□□ 1.01
SMIM28A0A1B0GU29 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SMIM28A0A1B0GU29 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SMIM28A0A1B0GU29 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SMIM28A0A1B0GU29 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
SMIM28A0A1B0GU29 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC21.34■■□□□ 1.01
SMIM28A0A1B0GU29 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC21.34■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms