Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
TRAV40A0A0B4J280 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC16.23■□□□□ 0.19
TRAV40A0A0B4J280 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC16.23■□□□□ 0.19
TRAV40A0A0B4J280 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
TRAV40A0A0B4J280 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
TRAV40A0A0B4J280 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
TRAV40A0A0B4J280 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC16.23■□□□□ 0.19
TRAV40A0A0B4J280 AL137060.1-201ENST00000618151 2648 ntBASIC16.23■□□□□ 0.19
TRAV40A0A0B4J280 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
TRAV40A0A0B4J280 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
TRAV40A0A0B4J280 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
TRAV40A0A0B4J280 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC16.22■□□□□ 0.19
TRAV40A0A0B4J280 KRT8P17-201ENST00000453110 1448 ntBASIC16.22■□□□□ 0.19
TRAV40A0A0B4J280 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
TRAV40A0A0B4J280 AC092720.2-201ENST00000602388 1665 ntBASIC16.22■□□□□ 0.19
TRAV40A0A0B4J280 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
TRAV40A0A0B4J280 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TRAV40A0A0B4J280 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
TRAV40A0A0B4J280 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC16.22■□□□□ 0.19
TRAV40A0A0B4J280 DHDH-203ENST00000522614 776 ntTSL 5 BASIC16.22■□□□□ 0.19
TRAV40A0A0B4J280 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
TRAV40A0A0B4J280 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
TRAV40A0A0B4J280 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TRAV40A0A0B4J280 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
TRAV40A0A0B4J280 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
TRAV40A0A0B4J280 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRAV40A0A0B4J280 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRAV40A0A0B4J280 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
TRAV40A0A0B4J280 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
TRAV40A0A0B4J280 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRAV40A0A0B4J280 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC16.21■□□□□ 0.19
TRAV40A0A0B4J280 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRAV40A0A0B4J280 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
TRAV40A0A0B4J280 TREX2-204ENST00000370212 861 ntTSL 5 BASIC16.21■□□□□ 0.19
TRAV40A0A0B4J280 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
TRAV40A0A0B4J280 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
TRAV40A0A0B4J280 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
TRAV40A0A0B4J280 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRAV40A0A0B4J280 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC16.21■□□□□ 0.19
TRAV40A0A0B4J280 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRAV40A0A0B4J280 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC16.21■□□□□ 0.19
TRAV40A0A0B4J280 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC16.21■□□□□ 0.19
TRAV40A0A0B4J280 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC16.21■□□□□ 0.19
TRAV40A0A0B4J280 AC113410.3-201ENST00000623366 203 ntBASIC16.21■□□□□ 0.19
TRAV40A0A0B4J280 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRAV40A0A0B4J280 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
TRAV40A0A0B4J280 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC16.21■□□□□ 0.19
TRAV40A0A0B4J280 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRAV40A0A0B4J280 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRAV40A0A0B4J280 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
TRAV40A0A0B4J280 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC16.21■□□□□ 0.18
TRAV40A0A0B4J280 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.18
TRAV40A0A0B4J280 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.18
TRAV40A0A0B4J280 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRAV40A0A0B4J280 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC16.2■□□□□ 0.18
TRAV40A0A0B4J280 HTR7P1-201ENST00000538670 1336 ntBASIC16.2■□□□□ 0.18
TRAV40A0A0B4J280 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRAV40A0A0B4J280 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
TRAV40A0A0B4J280 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC16.2■□□□□ 0.18
TRAV40A0A0B4J280 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRAV40A0A0B4J280 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
TRAV40A0A0B4J280 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
TRAV40A0A0B4J280 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRAV40A0A0B4J280 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRAV40A0A0B4J280 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC16.2■□□□□ 0.18
TRAV40A0A0B4J280 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRAV40A0A0B4J280 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
TRAV40A0A0B4J280 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC16.2■□□□□ 0.18
TRAV40A0A0B4J280 CALM3-202ENST00000391918 702 ntTSL 2 BASIC16.2■□□□□ 0.18
TRAV40A0A0B4J280 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC16.2■□□□□ 0.18
TRAV40A0A0B4J280 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
TRAV40A0A0B4J280 KRT16P5-201ENST00000455284 522 ntBASIC16.2■□□□□ 0.18
TRAV40A0A0B4J280 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC16.2■□□□□ 0.18
TRAV40A0A0B4J280 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC16.2■□□□□ 0.18
TRAV40A0A0B4J280 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC16.2■□□□□ 0.18
TRAV40A0A0B4J280 MIR4785-201ENST00000585005 73 ntBASIC16.2■□□□□ 0.18
TRAV40A0A0B4J280 AC004264.1-201ENST00000608354 794 ntBASIC16.2■□□□□ 0.18
TRAV40A0A0B4J280 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC16.2■□□□□ 0.18
TRAV40A0A0B4J280 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
TRAV40A0A0B4J280 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRAV40A0A0B4J280 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC16.2■□□□□ 0.18
TRAV40A0A0B4J280 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
TRAV40A0A0B4J280 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRAV40A0A0B4J280 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRAV40A0A0B4J280 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRAV40A0A0B4J280 KRT17P2-201ENST00000300992 1314 ntBASIC16.19■□□□□ 0.18
TRAV40A0A0B4J280 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TRAV40A0A0B4J280 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TRAV40A0A0B4J280 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRAV40A0A0B4J280 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
TRAV40A0A0B4J280 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRAV40A0A0B4J280 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC16.19■□□□□ 0.18
TRAV40A0A0B4J280 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC16.19■□□□□ 0.18
TRAV40A0A0B4J280 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC16.19■□□□□ 0.18
TRAV40A0A0B4J280 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRAV40A0A0B4J280 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRAV40A0A0B4J280 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TRAV40A0A0B4J280 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRAV40A0A0B4J280 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRAV40A0A0B4J280 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms