Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AC011374.2-201ENST00000607135 526 ntBASIC7.86□□□□□ -1.15
MSX1P28360 AL161457.2-204ENST00000609241 869 ntTSL 5 BASIC7.86□□□□□ -1.15
MSX1P28360 PROX1-AS1-221ENST00000615085 673 ntTSL 5 BASIC7.86□□□□□ -1.15
MSX1P28360 AL031772.1-216ENST00000619494 697 ntTSL 5 BASIC7.86□□□□□ -1.15
MSX1P28360 AC135068.5-201ENST00000624197 983 ntBASIC7.86□□□□□ -1.15
MSX1P28360 RPS20-201ENST00000009589 626 ntAPPRIS P1 TSL 1 (best) BASIC7.86□□□□□ -1.15
MSX1P28360 MORF4L2-201ENST00000360458 1824 ntAPPRIS P1 TSL 2 BASIC7.86□□□□□ -1.15
MSX1P28360 KCNJ15-205ENST00000398930 2914 ntAPPRIS P1 TSL 5 BASIC7.86□□□□□ -1.15
MSX1P28360 RAI14-220ENST00000512629 2941 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
MSX1P28360 LINC01139-201ENST00000400946 1537 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
MSX1P28360 CALCOCO2-201ENST00000258947 3682 ntAPPRIS P3 TSL 1 (best) BASIC7.86□□□□□ -1.15
MSX1P28360 XIAP-202ENST00000371199 8591 ntAPPRIS P1 TSL 1 (best) BASIC7.86□□□□□ -1.15
MSX1P28360 GABRR1-202ENST00000435811 3106 ntTSL 2 BASIC7.86□□□□□ -1.15
MSX1P28360 PPP2R2B-202ENST00000394409 10704 ntAPPRIS P1 TSL 1 (best) BASIC7.86□□□□□ -1.15
MSX1P28360 AL845331.3-201ENST00000562821 2028 ntTSL 2 BASIC7.86□□□□□ -1.15
MSX1P28360 UTY-210ENST00000538878 6574 ntAPPRIS ALT2 TSL 1 (best) BASIC7.86□□□□□ -1.15
MSX1P28360 LSM5-208ENST00000450169 2258 ntAPPRIS P1 TSL 1 (best) BASIC7.86□□□□□ -1.15
MSX1P28360 SLC7A2-203ENST00000470360 7638 ntAPPRIS P3 TSL 5 BASIC7.86□□□□□ -1.15
MSX1P28360 CTNND1-231ENST00000532463 5749 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
MSX1P28360 EPB41-201ENST00000343067 5956 ntAPPRIS P1 TSL 5 BASIC7.86□□□□□ -1.15
MSX1P28360 BUB3-203ENST00000368865 7828 ntAPPRIS P3 TSL 1 (best) BASIC7.86□□□□□ -1.15
MSX1P28360 ZNF215-202ENST00000414517 3257 ntAPPRIS P1 TSL 5 BASIC7.86□□□□□ -1.15
MSX1P28360 TMEM106A-208ENST00000612339 3266 ntAPPRIS P1 TSL 2 BASIC7.86□□□□□ -1.15
MSX1P28360 ZCCHC11-204ENST00000371544 5858 ntAPPRIS ALT2 TSL 5 BASIC7.86□□□□□ -1.15
MSX1P28360 CPNE8-201ENST00000331366 3489 ntAPPRIS P2 TSL 1 (best) BASIC7.86□□□□□ -1.15
MSX1P28360 FOXR2-201ENST00000339140 1926 ntAPPRIS P1 BASIC7.86□□□□□ -1.15
MSX1P28360 TCL6-207ENST00000483087 2194 ntTSL 2 BASIC7.86□□□□□ -1.15
MSX1P28360 CHRDL1-203ENST00000394797 2413 ntAPPRIS P3 TSL 5 BASIC7.86□□□□□ -1.15
MSX1P28360 PTPDC1-204ENST00000620992 4437 ntAPPRIS ALT2 TSL 2 BASIC7.85□□□□□ -1.15
MSX1P28360 HNRNPR-210ENST00000478691 7646 ntTSL 1 (best) BASIC7.85□□□□□ -1.15
MSX1P28360 BCAT1-206ENST00000539780 1360 ntTSL 2 BASIC7.85□□□□□ -1.15
MSX1P28360 UGT2B4-206ENST00000512583 1836 ntTSL 1 (best) BASIC7.85□□□□□ -1.15
MSX1P28360 FLJ31356-202ENST00000445878 3001 ntTSL 4 BASIC7.85□□□□□ -1.15
MSX1P28360 PSMD6-202ENST00000394431 1349 ntTSL 1 (best) BASIC7.85□□□□□ -1.15
MSX1P28360 PKP4-202ENST00000389759 4443 ntAPPRIS P4 TSL 1 (best) BASIC7.85□□□□□ -1.15
MSX1P28360 AL591848.3-201ENST00000570141 2968 ntBASIC7.85□□□□□ -1.15
MSX1P28360 OR1D2-202ENST00000641064 4882 ntAPPRIS P1 BASIC7.85□□□□□ -1.15
MSX1P28360 PIN4-201ENST00000218432 1780 ntTSL 2 BASIC7.85□□□□□ -1.15
MSX1P28360 AC016722.3-201ENST00000568862 2463 ntBASIC7.85□□□□□ -1.15
MSX1P28360 IBSP-201ENST00000226284 1546 ntAPPRIS P1 TSL 1 (best) BASIC7.85□□□□□ -1.15
MSX1P28360 HIPK2-201ENST00000342645 2937 ntTSL 5 BASIC7.85□□□□□ -1.15
MSX1P28360 CCDC83-202ENST00000342404 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC7.85□□□□□ -1.15
MSX1P28360 SIRPD-202ENST00000381623 1958 ntAPPRIS P2 TSL 1 (best) BASIC7.85□□□□□ -1.15
MSX1P28360 PIH1D3-201ENST00000336387 993 ntAPPRIS P1 TSL 5 BASIC7.85□□□□□ -1.15
MSX1P28360 RNU6-1331P-201ENST00000363658 106 ntBASIC7.85□□□□□ -1.15
MSX1P28360 RNA5SP141-201ENST00000364543 120 ntBASIC7.85□□□□□ -1.15
MSX1P28360 LIX1L-AS1-201ENST00000366105 377 ntTSL 5 BASIC7.85□□□□□ -1.15
MSX1P28360 RNY3P10-201ENST00000384764 102 ntBASIC7.85□□□□□ -1.15
MSX1P28360 SNORD115-47-201ENST00000391226 86 ntBASIC7.85□□□□□ -1.15
MSX1P28360 AL035419.1-201ENST00000397037 564 ntBASIC7.85□□□□□ -1.15
MSX1P28360 AC234778.1-201ENST00000399253 370 ntBASIC7.85□□□□□ -1.15
MSX1P28360 AC064874.1-201ENST00000409661 441 ntTSL 3 BASIC7.85□□□□□ -1.15
MSX1P28360 RNA5SP221-201ENST00000411271 103 ntBASIC7.85□□□□□ -1.15
MSX1P28360 AL138828.1-204ENST00000413745 898 ntTSL 5 BASIC7.85□□□□□ -1.15
MSX1P28360 AC023669.1-201ENST00000414915 524 ntTSL 3 BASIC7.85□□□□□ -1.15
MSX1P28360 AL137847.1-201ENST00000416473 444 ntTSL 2 BASIC7.85□□□□□ -1.15
MSX1P28360 MYB-206ENST00000420123 1051 ntTSL 5 BASIC7.85□□□□□ -1.15
MSX1P28360 LINC02020-202ENST00000421006 575 ntTSL 4 BASIC7.85□□□□□ -1.15
MSX1P28360 ZBTB8OSP2-201ENST00000423890 504 ntBASIC7.85□□□□□ -1.15
MSX1P28360 AC092066.1-201ENST00000425131 317 ntBASIC7.85□□□□□ -1.15
MSX1P28360 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC7.85□□□□□ -1.15
MSX1P28360 LINC02022-201ENST00000448129 635 ntTSL 2 BASIC7.85□□□□□ -1.15
MSX1P28360 SSXP1-201ENST00000453640 473 ntBASIC7.85□□□□□ -1.15
MSX1P28360 MYB-AS1-201ENST00000455534 449 ntTSL 2 BASIC7.85□□□□□ -1.15
MSX1P28360 AC091770.1-201ENST00000456513 373 ntTSL 2 BASIC7.85□□□□□ -1.15
MSX1P28360 AL606519.1-201ENST00000458146 580 ntTSL 2 BASIC7.85□□□□□ -1.15
MSX1P28360 KCNAB1-AS1-201ENST00000467794 456 ntTSL 2 BASIC7.85□□□□□ -1.15
MSX1P28360 NCOR1P1-202ENST00000486162 291 ntBASIC7.85□□□□□ -1.15
MSX1P28360 MYL5-205ENST00000505477 584 ntTSL 3 BASIC7.85□□□□□ -1.15
MSX1P28360 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC7.85□□□□□ -1.15
MSX1P28360 AC090458.1-203ENST00000527757 546 ntTSL 3 BASIC7.85□□□□□ -1.15
MSX1P28360 AP000873.2-205ENST00000529031 435 ntTSL 2 BASIC7.85□□□□□ -1.15
MSX1P28360 DEFB108A-201ENST00000530110 222 ntBASIC7.85□□□□□ -1.15
MSX1P28360 AP000873.3-201ENST00000531869 766 ntTSL 5 BASIC7.85□□□□□ -1.15
MSX1P28360 AC009509.1-201ENST00000536317 1110 ntTSL 5 BASIC7.85□□□□□ -1.15
MSX1P28360 SNHG1-217ENST00000541578 588 ntTSL 3 BASIC7.85□□□□□ -1.15
MSX1P28360 AC137767.1-202ENST00000543072 752 ntTSL 2 BASIC7.85□□□□□ -1.15
MSX1P28360 AC034102.1-201ENST00000552016 604 ntBASIC7.85□□□□□ -1.15
MSX1P28360 AL450442.1-201ENST00000554042 854 ntTSL 1 (best) BASIC7.85□□□□□ -1.15
MSX1P28360 MPPE1P1-201ENST00000557286 1076 ntBASIC7.85□□□□□ -1.15
MSX1P28360 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC7.85□□□□□ -1.15
MSX1P28360 TMEM87A-212ENST00000568432 750 ntTSL 3 BASIC7.85□□□□□ -1.15
MSX1P28360 MTCO1P40-201ENST00000574371 625 ntBASIC7.85□□□□□ -1.15
MSX1P28360 AC134669.1-201ENST00000581275 672 ntBASIC7.85□□□□□ -1.15
MSX1P28360 LINC01533-204ENST00000590719 435 ntTSL 5 BASIC7.85□□□□□ -1.15
MSX1P28360 AC026150.3-201ENST00000602595 499 ntBASIC7.85□□□□□ -1.15
MSX1P28360 AL512430.4-201ENST00000603085 613 ntBASIC7.85□□□□□ -1.15
MSX1P28360 AL049840.6-201ENST00000604583 345 ntBASIC7.85□□□□□ -1.15
MSX1P28360 AP001836.1-201ENST00000604675 523 ntBASIC7.85□□□□□ -1.15
MSX1P28360 AL390208.1-201ENST00000605885 644 ntBASIC7.85□□□□□ -1.15
MSX1P28360 AC093458.1-201ENST00000608912 222 ntBASIC7.85□□□□□ -1.15
MSX1P28360 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC7.85□□□□□ -1.15
MSX1P28360 SERPINB10-204ENST00000619595 1194 ntAPPRIS P1 TSL 1 (best) BASIC7.85□□□□□ -1.15
MSX1P28360 SEM1-224ENST00000623693 729 ntTSL 5 BASIC7.85□□□□□ -1.15
MSX1P28360 AC244517.7-201ENST00000625144 398 ntTSL 3 BASIC7.85□□□□□ -1.15
MSX1P28360 HCG18-238ENST00000449544 4262 ntTSL 2 BASIC7.85□□□□□ -1.15
MSX1P28360 CDK19-203ENST00000413605 6007 ntTSL 1 (best) BASIC7.85□□□□□ -1.15
MSX1P28360 ZNF780A-202ENST00000414720 2396 ntTSL 2 BASIC7.85□□□□□ -1.15
MSX1P28360 BRPF3-212ENST00000534694 4628 ntTSL 5 BASIC7.85□□□□□ -1.15
MSX1P28360 CACNB2-204ENST00000377315 3461 ntAPPRIS ALT1 TSL 1 (best) BASIC7.85□□□□□ -1.15
Retrieved 100 of 98,524 protein–RNA pairs in 123 ms