RNA–Protein interactions for RNA: ENST00000449544.5

HCG18-238, Transcript of HLA complex group 18, humanhuman

TSL 2 BASIC

Gene HCG18, Length 4,262 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HCG18-238ENST00000449544 DCAF8L2P0C7V8 631 aa16.68■□□□□ 0.26
HCG18-238ENST00000449544 NISCHQ9Y2I1 1504 aa16.66■□□□□ 0.26
HCG18-238ENST00000449544 ABCC9O60706 1549 aa15.28■□□□□ 0.04
HCG18-238ENST00000449544 SHROOM4Q9ULL8 1493 aa14.91□□□□□ -0.02
HCG18-238ENST00000449544 PABPN1Q86U42 306 aaKnown RBP eCLIP14.85□□□□□ -0.03
HCG18-238ENST00000449544 SUPT5HO00267 1087 aaKnown RBP14.63□□□□□ -0.07
HCG18-238ENST00000449544 FAM9AQ8IZU1 332 aaPredicted RBP14.27□□□□□ -0.13
HCG18-238ENST00000449544 CCDC180Q9P1Z9 1646 aa14.13□□□□□ -0.15
HCG18-238ENST00000449544 RB1CC1Q8TDY2 1594 aa14.12□□□□□ -0.15
HCG18-238ENST00000449544 EHMT2Q96KQ7 1210 aa14□□□□□ -0.17
HCG18-238ENST00000449544 SCRIBQ14160 1630 aa13.96□□□□□ -0.17
HCG18-238ENST00000449544 FBLN2P98095 1184 aa13.93□□□□□ -0.18
HCG18-238ENST00000449544 TTBK1Q5TCY1 1321 aaPredicted RBP13.88□□□□□ -0.19
HCG18-238ENST00000449544 NACADO15069 1562 aa13.88□□□□□ -0.19
HCG18-238ENST00000449544 RANGAP1P46060 587 aaPredicted RBP13.83□□□□□ -0.2
HCG18-238ENST00000449544 ATP1B4Q9UN42 357 aaPredicted RBP13.77□□□□□ -0.2
HCG18-238ENST00000449544 ERCC6Q03468 1493 aa13.71□□□□□ -0.22
HCG18-238ENST00000449544 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.67□□□□□ -0.22
HCG18-238ENST00000449544 HNRNPUL2Q1KMD3 747 aaKnown RBP13.67□□□□□ -0.22
HCG18-238ENST00000449544 TRIM41Q8WV44 630 aa13.66□□□□□ -0.22
HCG18-238ENST00000449544 ZCCHC6Q5VYS8 1495 aaKnown RBP13.65□□□□□ -0.23
HCG18-238ENST00000449544 APLP2Q06481 763 aa13.64□□□□□ -0.23
HCG18-238ENST00000449544 MYT1LQ9UL68 1186 aa13.63□□□□□ -0.23
HCG18-238ENST00000449544 CECR2Q9BXF3 1484 aa13.58□□□□□ -0.24
HCG18-238ENST00000449544 UBTFP17480 764 aaKnown RBP13.54□□□□□ -0.24
HCG18-238ENST00000449544 DNAJC5BQ9UF47 199 aa13.51□□□□□ -0.25
HCG18-238ENST00000449544 NPM1P06748 294 aaKnown RBP eCLIP13.5□□□□□ -0.25
HCG18-238ENST00000449544 TRHP20396 242 aaPredicted RBP13.47□□□□□ -0.25
HCG18-238ENST00000449544 CHMP7Q8WUX9 453 aaPredicted RBP13.43□□□□□ -0.26
HCG18-238ENST00000449544 BAZ1BQ9UIG0 1483 aaKnown RBP13.39□□□□□ -0.27
HCG18-238ENST00000449544 PDS5BQ9NTI5 1447 aa13.26□□□□□ -0.29
HCG18-238ENST00000449544 DCAF1Q9Y4B6 1507 aa13.25□□□□□ -0.29
HCG18-238ENST00000449544 MYO15BQ96JP2 1530 aa13.21□□□□□ -0.29
HCG18-238ENST00000449544 CHIC1Q5VXU3 224 aa13.21□□□□□ -0.29
HCG18-238ENST00000449544 ARID3CA6NKF2 412 aa13.17□□□□□ -0.3
HCG18-238ENST00000449544 PLPPR3Q6T4P5 718 aa13.16□□□□□ -0.3
HCG18-238ENST00000449544 OSCARQ8IYS5 282 aa13.15□□□□□ -0.3
HCG18-238ENST00000449544 BAZ1AQ9NRL2 1556 aaPredicted RBP13.13□□□□□ -0.31
HCG18-238ENST00000449544 AEBP2Q6ZN18 517 aaPredicted RBP13.12□□□□□ -0.31
HCG18-238ENST00000449544 ESF1Q9H501 851 aaKnown RBP13.11□□□□□ -0.31
HCG18-238ENST00000449544 SMARCA2P51531 1590 aa13.1□□□□□ -0.31
HCG18-238ENST00000449544 CYB5RLQ6IPT4 315 aa13.08□□□□□ -0.31
HCG18-238ENST00000449544 P3H3Q8IVL6 736 aa13.08□□□□□ -0.31
HCG18-238ENST00000449544 EIF4G1Q04637 1599 aaKnown RBP13.05□□□□□ -0.32
HCG18-238ENST00000449544 CADPSQ9ULU8 1353 aa13.03□□□□□ -0.32
HCG18-238ENST00000449544 CC2D2AQ9P2K1 1620 aa13□□□□□ -0.33
HCG18-238ENST00000449544 ATAD2BQ9ULI0 1458 aa12.99□□□□□ -0.33
HCG18-238ENST00000449544 RSF1Q96T23 1441 aaPredicted RBP12.97□□□□□ -0.33
HCG18-238ENST00000449544 KCNH8Q96L42 1107 aa12.96□□□□□ -0.33
HCG18-238ENST00000449544 CDK11AQ9UQ88 783 aaPredicted RBP12.96□□□□□ -0.33
HCG18-238ENST00000449544 ARID4BQ4LE39 1312 aaPredicted RBP12.93□□□□□ -0.34
HCG18-238ENST00000449544 CEP164Q9UPV0 1460 aa12.91□□□□□ -0.34
HCG18-238ENST00000449544 TDRD9Q8NDG6 1382 aaKnown RBP12.89□□□□□ -0.35
HCG18-238ENST00000449544 ZNF777Q9ULD5 760 aaPredicted RBP12.88□□□□□ -0.35
HCG18-238ENST00000449544 ITGAEP38570 1179 aa12.87□□□□□ -0.35
HCG18-238ENST00000449544 NCAPD3P42695 1498 aa12.86□□□□□ -0.35
HCG18-238ENST00000449544 BCANQ96GW7 911 aa12.86□□□□□ -0.35
HCG18-238ENST00000449544 CSRNP3Q8WYN3 585 aa12.86□□□□□ -0.35
HCG18-238ENST00000449544 MROH2BQ7Z745 1585 aa12.86□□□□□ -0.35
HCG18-238ENST00000449544 SOGA1O94964 1423 aa12.82□□□□□ -0.36
HCG18-238ENST00000449544 FANCD2Q9BXW9 1451 aa12.81□□□□□ -0.36
HCG18-238ENST00000449544 WRNQ14191 1432 aaPredicted RBP eCLIP12.78□□□□□ -0.36
HCG18-238ENST00000449544 PLEKHD1A6NEE1 506 aa12.76□□□□□ -0.37
HCG18-238ENST00000449544 NESP48681 1621 aa12.76□□□□□ -0.37
HCG18-238ENST00000449544 STAG3Q9UJ98 1225 aa12.74□□□□□ -0.37
HCG18-238ENST00000449544 BICRAQ9NZM4 1560 aa12.74□□□□□ -0.37
HCG18-238ENST00000449544 SMARCA4P51532 1647 aa12.73□□□□□ -0.37
HCG18-238ENST00000449544 PPARGC1BQ86YN6 1023 aaKnown RBP12.72□□□□□ -0.37
HCG18-238ENST00000449544 KIF27Q86VH2 1401 aa12.7□□□□□ -0.38
HCG18-238ENST00000449544 FAM50AQ14320 339 aaKnown RBP12.7□□□□□ -0.38
HCG18-238ENST00000449544 CUX2O14529 1486 aa12.7□□□□□ -0.38
HCG18-238ENST00000449544 CCDC88BA6NC98 1476 aa12.68□□□□□ -0.38
HCG18-238ENST00000449544 JPH4Q96JJ6 628 aa12.67□□□□□ -0.38
HCG18-238ENST00000449544 ABCC8Q09428 1581 aa12.66□□□□□ -0.38
HCG18-238ENST00000449544 MLECQ14165 292 aa12.65□□□□□ -0.38
HCG18-238ENST00000449544 MRC2Q9UBG0 1479 aa12.65□□□□□ -0.38
HCG18-238ENST00000449544 CARMIL2Q6F5E8 1435 aa12.64□□□□□ -0.39
HCG18-238ENST00000449544 FAM69CQ0P6D2 419 aa12.64□□□□□ -0.39
HCG18-238ENST00000449544 LOC105371045A0A1W2PR82 267 aa12.62□□□□□ -0.39
HCG18-238ENST00000449544 DNAJC5Q9H3Z4 198 aa12.6□□□□□ -0.39
HCG18-238ENST00000449544 CHGAP10645 457 aaKnown RBP12.59□□□□□ -0.39
HCG18-238ENST00000449544 WIZO95785 1651 aa12.58□□□□□ -0.39
HCG18-238ENST00000449544 CARMIL1Q5VZK9 1371 aa12.58□□□□□ -0.4
HCG18-238ENST00000449544 TRIM52Q96A61 297 aa12.58□□□□□ -0.4
HCG18-238ENST00000449544 TSPY4P0CV99 314 aa12.58□□□□□ -0.4
HCG18-238ENST00000449544 TSPY10P0CW01 314 aa12.58□□□□□ -0.4
HCG18-238ENST00000449544 AQRO60306 1485 aaKnown RBP eCLIP12.57□□□□□ -0.4
HCG18-238ENST00000449544 TOP2AP11388 1531 aaKnown RBP12.56□□□□□ -0.4
HCG18-238ENST00000449544 SCAF1Q9H7N4 1312 aaKnown RBP12.54□□□□□ -0.4
HCG18-238ENST00000449544 HMGXB3Q12766 1538 aa12.53□□□□□ -0.4
HCG18-238ENST00000449544 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.51□□□□□ -0.412e-6■■□□□ 11.6
HCG18-238ENST00000449544 SLC4A1APQ9BWU0 796 aaKnown RBP12.5□□□□□ -0.41
HCG18-238ENST00000449544 C14orf37Q86TY3 774 aa12.49□□□□□ -0.41
HCG18-238ENST00000449544 IFT140Q96RY7 1462 aa12.48□□□□□ -0.41
HCG18-238ENST00000449544 PTPRGP23470 1445 aa12.48□□□□□ -0.41
HCG18-238ENST00000449544 MTUS2Q5JR59 1369 aa12.47□□□□□ -0.41
HCG18-238ENST00000449544 RAD54L2Q9Y4B4 1467 aa12.46□□□□□ -0.41
HCG18-238ENST00000449544 LAMC3Q9Y6N6 1575 aa12.45□□□□□ -0.42
HCG18-238ENST00000449544 GAPVD1Q14C86 1478 aa12.45□□□□□ -0.42
HCG18-238ENST00000449544 CFTRP13569 1480 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms