Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
TRIM39Q9HCM9 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC19.76■□□□□ 0.75
TRIM39Q9HCM9 DET1-207ENST00000564406 2315 ntTSL 2 BASIC19.76■□□□□ 0.75
TRIM39Q9HCM9 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
TRIM39Q9HCM9 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
TRIM39Q9HCM9 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
TRIM39Q9HCM9 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
TRIM39Q9HCM9 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
TRIM39Q9HCM9 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
TRIM39Q9HCM9 GABARAPL3-202ENST00000624044 1851 ntBASIC19.75■□□□□ 0.75
TRIM39Q9HCM9 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC19.75■□□□□ 0.75
TRIM39Q9HCM9 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
TRIM39Q9HCM9 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC19.75■□□□□ 0.75
TRIM39Q9HCM9 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
TRIM39Q9HCM9 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
TRIM39Q9HCM9 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
TRIM39Q9HCM9 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
TRIM39Q9HCM9 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
TRIM39Q9HCM9 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC19.75■□□□□ 0.75
TRIM39Q9HCM9 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
TRIM39Q9HCM9 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC19.75■□□□□ 0.75
TRIM39Q9HCM9 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
TRIM39Q9HCM9 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC19.75■□□□□ 0.75
TRIM39Q9HCM9 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
TRIM39Q9HCM9 AC073648.6-201ENST00000641589 218 ntBASIC19.75■□□□□ 0.75
TRIM39Q9HCM9 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
TRIM39Q9HCM9 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC19.75■□□□□ 0.75
TRIM39Q9HCM9 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
TRIM39Q9HCM9 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
TRIM39Q9HCM9 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
TRIM39Q9HCM9 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
TRIM39Q9HCM9 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC19.75■□□□□ 0.75
TRIM39Q9HCM9 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC19.75■□□□□ 0.75
TRIM39Q9HCM9 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
TRIM39Q9HCM9 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
TRIM39Q9HCM9 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
TRIM39Q9HCM9 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
TRIM39Q9HCM9 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC19.74■□□□□ 0.75
TRIM39Q9HCM9 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
TRIM39Q9HCM9 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC19.74■□□□□ 0.75
TRIM39Q9HCM9 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
TRIM39Q9HCM9 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
TRIM39Q9HCM9 AC092667.1-201ENST00000434301 2586 ntBASIC19.74■□□□□ 0.75
TRIM39Q9HCM9 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC19.74■□□□□ 0.75
TRIM39Q9HCM9 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
TRIM39Q9HCM9 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
TRIM39Q9HCM9 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
TRIM39Q9HCM9 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
TRIM39Q9HCM9 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
TRIM39Q9HCM9 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
TRIM39Q9HCM9 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC19.74■□□□□ 0.75
TRIM39Q9HCM9 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC19.74■□□□□ 0.75
TRIM39Q9HCM9 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC19.74■□□□□ 0.75
TRIM39Q9HCM9 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC19.74■□□□□ 0.75
TRIM39Q9HCM9 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
TRIM39Q9HCM9 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
TRIM39Q9HCM9 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
TRIM39Q9HCM9 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
TRIM39Q9HCM9 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
TRIM39Q9HCM9 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
TRIM39Q9HCM9 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
TRIM39Q9HCM9 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
TRIM39Q9HCM9 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
TRIM39Q9HCM9 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
TRIM39Q9HCM9 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
TRIM39Q9HCM9 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
TRIM39Q9HCM9 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC19.73■□□□□ 0.75
TRIM39Q9HCM9 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC19.73■□□□□ 0.75
TRIM39Q9HCM9 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
TRIM39Q9HCM9 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC19.73■□□□□ 0.75
TRIM39Q9HCM9 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC19.73■□□□□ 0.75
TRIM39Q9HCM9 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC19.73■□□□□ 0.75
TRIM39Q9HCM9 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
TRIM39Q9HCM9 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC19.73■□□□□ 0.75
TRIM39Q9HCM9 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
TRIM39Q9HCM9 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
TRIM39Q9HCM9 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
TRIM39Q9HCM9 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
TRIM39Q9HCM9 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
TRIM39Q9HCM9 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
TRIM39Q9HCM9 KRT16P6-202ENST00000425692 1426 ntBASIC19.72■□□□□ 0.75
TRIM39Q9HCM9 RPS2P52-201ENST00000469610 820 ntBASIC19.72■□□□□ 0.75
TRIM39Q9HCM9 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
TRIM39Q9HCM9 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC19.72■□□□□ 0.75
TRIM39Q9HCM9 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC19.72■□□□□ 0.75
TRIM39Q9HCM9 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
TRIM39Q9HCM9 MMD2-204ENST00000612910 778 ntTSL 5 BASIC19.72■□□□□ 0.75
TRIM39Q9HCM9 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
TRIM39Q9HCM9 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
TRIM39Q9HCM9 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
TRIM39Q9HCM9 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC19.72■□□□□ 0.75
TRIM39Q9HCM9 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
TRIM39Q9HCM9 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC19.72■□□□□ 0.75
TRIM39Q9HCM9 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
TRIM39Q9HCM9 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC19.72■□□□□ 0.75
TRIM39Q9HCM9 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC19.71■□□□□ 0.75
TRIM39Q9HCM9 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC19.71■□□□□ 0.75
TRIM39Q9HCM9 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC19.71■□□□□ 0.75
TRIM39Q9HCM9 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
TRIM39Q9HCM9 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms