Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 CYP2T3P-201ENST00000601990 817 ntBASIC20.59■□□□□ 0.89
PCDH9Q9HC56 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
PCDH9Q9HC56 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC20.59■□□□□ 0.89
PCDH9Q9HC56 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
PCDH9Q9HC56 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC20.59■□□□□ 0.89
PCDH9Q9HC56 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
PCDH9Q9HC56 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
PCDH9Q9HC56 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
PCDH9Q9HC56 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC20.58■□□□□ 0.89
PCDH9Q9HC56 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.89
PCDH9Q9HC56 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC20.58■□□□□ 0.89
PCDH9Q9HC56 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
PCDH9Q9HC56 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
PCDH9Q9HC56 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC20.58■□□□□ 0.89
PCDH9Q9HC56 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
PCDH9Q9HC56 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC20.58■□□□□ 0.89
PCDH9Q9HC56 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
PCDH9Q9HC56 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC20.58■□□□□ 0.89
PCDH9Q9HC56 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
PCDH9Q9HC56 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC20.58■□□□□ 0.89
PCDH9Q9HC56 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC20.58■□□□□ 0.89
PCDH9Q9HC56 PHB2-213ENST00000546111 858 ntTSL 2 BASIC20.58■□□□□ 0.89
PCDH9Q9HC56 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
PCDH9Q9HC56 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC20.58■□□□□ 0.89
PCDH9Q9HC56 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
PCDH9Q9HC56 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
PCDH9Q9HC56 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC20.58■□□□□ 0.88
PCDH9Q9HC56 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
PCDH9Q9HC56 MOK-225ENST00000522867 1883 ntTSL 5 BASIC20.58■□□□□ 0.88
PCDH9Q9HC56 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.88
PCDH9Q9HC56 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.88
PCDH9Q9HC56 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PCDH9Q9HC56 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC20.57■□□□□ 0.88
PCDH9Q9HC56 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PCDH9Q9HC56 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
PCDH9Q9HC56 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PCDH9Q9HC56 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PCDH9Q9HC56 ISCU-212ENST00000547005 795 ntTSL 3 BASIC20.57■□□□□ 0.88
PCDH9Q9HC56 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC20.57■□□□□ 0.88
PCDH9Q9HC56 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC20.57■□□□□ 0.88
PCDH9Q9HC56 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC20.57■□□□□ 0.88
PCDH9Q9HC56 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC20.57■□□□□ 0.88
PCDH9Q9HC56 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC20.57■□□□□ 0.88
PCDH9Q9HC56 MARS-234ENST00000630571 216 ntTSL 5 BASIC20.57■□□□□ 0.88
PCDH9Q9HC56 MARS-235ENST00000630803 183 ntTSL 3 BASIC20.57■□□□□ 0.88
PCDH9Q9HC56 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
PCDH9Q9HC56 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
PCDH9Q9HC56 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC20.57■□□□□ 0.88
PCDH9Q9HC56 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC20.57■□□□□ 0.88
PCDH9Q9HC56 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
PCDH9Q9HC56 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC20.57■□□□□ 0.88
PCDH9Q9HC56 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC20.57■□□□□ 0.88
PCDH9Q9HC56 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PCDH9Q9HC56 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC20.57■□□□□ 0.88
PCDH9Q9HC56 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PCDH9Q9HC56 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
PCDH9Q9HC56 PTBP1P-201ENST00000554374 1601 ntBASIC20.56■□□□□ 0.88
PCDH9Q9HC56 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PCDH9Q9HC56 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PCDH9Q9HC56 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC20.56■□□□□ 0.88
PCDH9Q9HC56 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PCDH9Q9HC56 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC20.56■□□□□ 0.88
PCDH9Q9HC56 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PCDH9Q9HC56 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
PCDH9Q9HC56 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
PCDH9Q9HC56 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
PCDH9Q9HC56 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC20.56■□□□□ 0.88
PCDH9Q9HC56 KRT18P68-201ENST00000392293 1000 ntBASIC20.56■□□□□ 0.88
PCDH9Q9HC56 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
PCDH9Q9HC56 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC20.56■□□□□ 0.88
PCDH9Q9HC56 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC20.56■□□□□ 0.88
PCDH9Q9HC56 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC20.56■□□□□ 0.88
PCDH9Q9HC56 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
PCDH9Q9HC56 GCK-205ENST00000437084 1385 ntTSL 5 BASIC20.56■□□□□ 0.88
PCDH9Q9HC56 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC20.56■□□□□ 0.88
PCDH9Q9HC56 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC20.56■□□□□ 0.88
PCDH9Q9HC56 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
PCDH9Q9HC56 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
PCDH9Q9HC56 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
PCDH9Q9HC56 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC20.55■□□□□ 0.88
PCDH9Q9HC56 POLI-202ENST00000406285 2030 ntTSL 2 BASIC20.55■□□□□ 0.88
PCDH9Q9HC56 TREX1-205ENST00000625293 1783 ntBASIC20.55■□□□□ 0.88
PCDH9Q9HC56 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC20.55■□□□□ 0.88
PCDH9Q9HC56 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
PCDH9Q9HC56 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PCDH9Q9HC56 TSPY6P-201ENST00000448518 926 ntBASIC20.55■□□□□ 0.88
PCDH9Q9HC56 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC20.55■□□□□ 0.88
PCDH9Q9HC56 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
PCDH9Q9HC56 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC20.55■□□□□ 0.88
PCDH9Q9HC56 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC20.55■□□□□ 0.88
PCDH9Q9HC56 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC20.55■□□□□ 0.88
PCDH9Q9HC56 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
PCDH9Q9HC56 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
PCDH9Q9HC56 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC20.55■□□□□ 0.88
PCDH9Q9HC56 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC20.55■□□□□ 0.88
PCDH9Q9HC56 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PCDH9Q9HC56 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
PCDH9Q9HC56 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PCDH9Q9HC56 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC20.54■□□□□ 0.88
PCDH9Q9HC56 GOLGA2P11-201ENST00000562660 1621 ntBASIC20.54■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms