Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC19.37■□□□□ 0.69
CCDC28BQ9BUN5 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC19.37■□□□□ 0.69
CCDC28BQ9BUN5 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC28BQ9BUN5 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC19.37■□□□□ 0.69
CCDC28BQ9BUN5 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC19.37■□□□□ 0.69
CCDC28BQ9BUN5 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC19.37■□□□□ 0.69
CCDC28BQ9BUN5 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC28BQ9BUN5 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC28BQ9BUN5 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC19.37■□□□□ 0.69
CCDC28BQ9BUN5 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC19.37■□□□□ 0.69
CCDC28BQ9BUN5 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC28BQ9BUN5 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC19.37■□□□□ 0.69
CCDC28BQ9BUN5 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC19.36■□□□□ 0.69
CCDC28BQ9BUN5 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC19.36■□□□□ 0.69
CCDC28BQ9BUN5 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
CCDC28BQ9BUN5 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC28BQ9BUN5 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC28BQ9BUN5 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
CCDC28BQ9BUN5 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
CCDC28BQ9BUN5 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC28BQ9BUN5 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC28BQ9BUN5 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC28BQ9BUN5 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC28BQ9BUN5 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC28BQ9BUN5 NME4-202ENST00000382940 766 ntTSL 3 BASIC19.36■□□□□ 0.69
CCDC28BQ9BUN5 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC28BQ9BUN5 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC19.36■□□□□ 0.69
CCDC28BQ9BUN5 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC19.36■□□□□ 0.69
CCDC28BQ9BUN5 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC19.36■□□□□ 0.69
CCDC28BQ9BUN5 SLC7A5P1-201ENST00000568957 537 ntBASIC19.36■□□□□ 0.69
CCDC28BQ9BUN5 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
CCDC28BQ9BUN5 NME4-211ENST00000620944 1193 ntTSL 2 BASIC19.36■□□□□ 0.69
CCDC28BQ9BUN5 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC28BQ9BUN5 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
CCDC28BQ9BUN5 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC19.36■□□□□ 0.69
CCDC28BQ9BUN5 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC28BQ9BUN5 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC28BQ9BUN5 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC19.36■□□□□ 0.69
CCDC28BQ9BUN5 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC28BQ9BUN5 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC28BQ9BUN5 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
CCDC28BQ9BUN5 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC28BQ9BUN5 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC28BQ9BUN5 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC28BQ9BUN5 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC28BQ9BUN5 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
CCDC28BQ9BUN5 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC19.35■□□□□ 0.69
CCDC28BQ9BUN5 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC28BQ9BUN5 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC28BQ9BUN5 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
CCDC28BQ9BUN5 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC19.35■□□□□ 0.69
CCDC28BQ9BUN5 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC19.35■□□□□ 0.69
CCDC28BQ9BUN5 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC19.35■□□□□ 0.69
CCDC28BQ9BUN5 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC19.35■□□□□ 0.69
CCDC28BQ9BUN5 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC28BQ9BUN5 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC28BQ9BUN5 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC28BQ9BUN5 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC19.35■□□□□ 0.69
CCDC28BQ9BUN5 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC28BQ9BUN5 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC28BQ9BUN5 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC19.34■□□□□ 0.69
CCDC28BQ9BUN5 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC19.34■□□□□ 0.69
CCDC28BQ9BUN5 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC19.34■□□□□ 0.69
CCDC28BQ9BUN5 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC19.34■□□□□ 0.69
CCDC28BQ9BUN5 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
CCDC28BQ9BUN5 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
CCDC28BQ9BUN5 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC19.34■□□□□ 0.69
CCDC28BQ9BUN5 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
CCDC28BQ9BUN5 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CCDC28BQ9BUN5 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CCDC28BQ9BUN5 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC19.34■□□□□ 0.69
CCDC28BQ9BUN5 PGM5P4-201ENST00000421970 445 ntBASIC19.34■□□□□ 0.69
CCDC28BQ9BUN5 PEMT-206ENST00000435340 960 ntTSL 5 BASIC19.34■□□□□ 0.69
CCDC28BQ9BUN5 CDV3P1-201ENST00000471403 739 ntBASIC19.34■□□□□ 0.69
CCDC28BQ9BUN5 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC19.34■□□□□ 0.69
CCDC28BQ9BUN5 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CCDC28BQ9BUN5 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CCDC28BQ9BUN5 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC19.34■□□□□ 0.69
CCDC28BQ9BUN5 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
CCDC28BQ9BUN5 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CCDC28BQ9BUN5 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
CCDC28BQ9BUN5 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
CCDC28BQ9BUN5 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
CCDC28BQ9BUN5 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC19.33■□□□□ 0.69
CCDC28BQ9BUN5 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
CCDC28BQ9BUN5 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.69
CCDC28BQ9BUN5 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
CCDC28BQ9BUN5 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
CCDC28BQ9BUN5 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
CCDC28BQ9BUN5 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
CCDC28BQ9BUN5 AC097381.1-201ENST00000429019 1296 ntBASIC19.33■□□□□ 0.68
CCDC28BQ9BUN5 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC19.33■□□□□ 0.68
CCDC28BQ9BUN5 AC110285.6-201ENST00000617652 491 ntBASIC19.33■□□□□ 0.68
CCDC28BQ9BUN5 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC19.33■□□□□ 0.68
CCDC28BQ9BUN5 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
CCDC28BQ9BUN5 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
CCDC28BQ9BUN5 AC079598.2-202ENST00000546624 1451 ntBASIC19.33■□□□□ 0.68
CCDC28BQ9BUN5 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
CCDC28BQ9BUN5 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CCDC28BQ9BUN5 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms