Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC21.66■■□□□ 1.06
LRCH3Q96II8 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
LRCH3Q96II8 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC21.66■■□□□ 1.06
LRCH3Q96II8 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
LRCH3Q96II8 GUSBP5-202ENST00000510805 1989 ntBASIC21.66■■□□□ 1.06
LRCH3Q96II8 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
LRCH3Q96II8 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
LRCH3Q96II8 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC21.66■■□□□ 1.06
LRCH3Q96II8 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
LRCH3Q96II8 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC21.66■■□□□ 1.06
LRCH3Q96II8 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC21.66■■□□□ 1.06
LRCH3Q96II8 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
LRCH3Q96II8 FSCN1P1-201ENST00000568912 1481 ntBASIC21.65■■□□□ 1.06
LRCH3Q96II8 KRT8P45-201ENST00000414328 1447 ntBASIC21.65■■□□□ 1.06
LRCH3Q96II8 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
LRCH3Q96II8 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
LRCH3Q96II8 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC21.65■■□□□ 1.06
LRCH3Q96II8 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
LRCH3Q96II8 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
LRCH3Q96II8 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
LRCH3Q96II8 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC21.65■■□□□ 1.06
LRCH3Q96II8 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC21.65■■□□□ 1.06
LRCH3Q96II8 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC21.65■■□□□ 1.06
LRCH3Q96II8 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC21.65■■□□□ 1.06
LRCH3Q96II8 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC21.65■■□□□ 1.06
LRCH3Q96II8 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC21.65■■□□□ 1.06
LRCH3Q96II8 PTK2-216ENST00000519881 863 ntTSL 3 BASIC21.65■■□□□ 1.06
LRCH3Q96II8 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
LRCH3Q96II8 AL031985.4-201ENST00000642138 673 ntBASIC21.65■■□□□ 1.06
LRCH3Q96II8 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
LRCH3Q96II8 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
LRCH3Q96II8 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC21.64■■□□□ 1.06
LRCH3Q96II8 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
LRCH3Q96II8 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.06
LRCH3Q96II8 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC21.64■■□□□ 1.06
LRCH3Q96II8 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
LRCH3Q96II8 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.05
LRCH3Q96II8 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
LRCH3Q96II8 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC21.64■■□□□ 1.05
LRCH3Q96II8 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
LRCH3Q96II8 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
LRCH3Q96II8 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC21.64■■□□□ 1.05
LRCH3Q96II8 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC21.64■■□□□ 1.05
LRCH3Q96II8 AL022342.1-201ENST00000400363 863 ntBASIC21.64■■□□□ 1.05
LRCH3Q96II8 AL359075.1-203ENST00000462729 1002 ntBASIC21.64■■□□□ 1.05
LRCH3Q96II8 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
LRCH3Q96II8 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC21.64■■□□□ 1.05
LRCH3Q96II8 AL356652.1-201ENST00000615962 565 ntBASIC21.64■■□□□ 1.05
LRCH3Q96II8 AC130371.2-201ENST00000619443 611 ntBASIC21.64■■□□□ 1.05
LRCH3Q96II8 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
LRCH3Q96II8 COMT-203ENST00000403184 2217 ntTSL 2 BASIC21.64■■□□□ 1.05
LRCH3Q96II8 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC21.64■■□□□ 1.05
LRCH3Q96II8 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC21.64■■□□□ 1.05
LRCH3Q96II8 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
LRCH3Q96II8 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC21.64■■□□□ 1.05
LRCH3Q96II8 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
LRCH3Q96II8 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
LRCH3Q96II8 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
LRCH3Q96II8 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC21.63■■□□□ 1.05
LRCH3Q96II8 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC21.63■■□□□ 1.05
LRCH3Q96II8 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC21.63■■□□□ 1.05
LRCH3Q96II8 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC21.63■■□□□ 1.05
LRCH3Q96II8 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
LRCH3Q96II8 AC097488.1-201ENST00000507834 756 ntBASIC21.63■■□□□ 1.05
LRCH3Q96II8 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC21.63■■□□□ 1.05
LRCH3Q96II8 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC21.63■■□□□ 1.05
LRCH3Q96II8 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
LRCH3Q96II8 LSR-203ENST00000360798 1963 ntTSL 2 BASIC21.63■■□□□ 1.05
LRCH3Q96II8 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
LRCH3Q96II8 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
LRCH3Q96II8 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC21.62■■□□□ 1.05
LRCH3Q96II8 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC21.62■■□□□ 1.05
LRCH3Q96II8 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC21.62■■□□□ 1.05
LRCH3Q96II8 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
LRCH3Q96II8 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
LRCH3Q96II8 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC21.62■■□□□ 1.05
LRCH3Q96II8 KRT17P6-201ENST00000453795 1220 ntBASIC21.62■■□□□ 1.05
LRCH3Q96II8 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC21.62■■□□□ 1.05
LRCH3Q96II8 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC21.62■■□□□ 1.05
LRCH3Q96II8 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC21.62■■□□□ 1.05
LRCH3Q96II8 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC21.62■■□□□ 1.05
LRCH3Q96II8 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC21.62■■□□□ 1.05
LRCH3Q96II8 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC21.62■■□□□ 1.05
LRCH3Q96II8 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC21.62■■□□□ 1.05
LRCH3Q96II8 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC21.62■■□□□ 1.05
LRCH3Q96II8 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC21.62■■□□□ 1.05
LRCH3Q96II8 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
LRCH3Q96II8 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC21.61■■□□□ 1.05
LRCH3Q96II8 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
LRCH3Q96II8 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
LRCH3Q96II8 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
LRCH3Q96II8 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
LRCH3Q96II8 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC21.61■■□□□ 1.05
LRCH3Q96II8 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC21.61■■□□□ 1.05
LRCH3Q96II8 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC21.61■■□□□ 1.05
LRCH3Q96II8 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
LRCH3Q96II8 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC21.61■■□□□ 1.05
LRCH3Q96II8 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC21.61■■□□□ 1.05
LRCH3Q96II8 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC21.61■■□□□ 1.05
LRCH3Q96II8 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms