Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SLC44A3Q8N4M1 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SLC44A3Q8N4M1 GUSBP5-202ENST00000510805 1989 ntBASIC20.48■□□□□ 0.87
SLC44A3Q8N4M1 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
SLC44A3Q8N4M1 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
SLC44A3Q8N4M1 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SLC44A3Q8N4M1 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SLC44A3Q8N4M1 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SLC44A3Q8N4M1 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SLC44A3Q8N4M1 KRT8P20-201ENST00000423953 1409 ntBASIC20.48■□□□□ 0.87
SLC44A3Q8N4M1 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SLC44A3Q8N4M1 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
SLC44A3Q8N4M1 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC20.48■□□□□ 0.87
SLC44A3Q8N4M1 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
SLC44A3Q8N4M1 AP005242.2-201ENST00000580065 1175 ntBASIC20.48■□□□□ 0.87
SLC44A3Q8N4M1 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC20.48■□□□□ 0.87
SLC44A3Q8N4M1 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC20.48■□□□□ 0.87
SLC44A3Q8N4M1 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SLC44A3Q8N4M1 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC20.48■□□□□ 0.87
SLC44A3Q8N4M1 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
SLC44A3Q8N4M1 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC20.48■□□□□ 0.87
SLC44A3Q8N4M1 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
SLC44A3Q8N4M1 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SLC44A3Q8N4M1 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SLC44A3Q8N4M1 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SLC44A3Q8N4M1 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
SLC44A3Q8N4M1 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC20.47■□□□□ 0.87
SLC44A3Q8N4M1 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC20.47■□□□□ 0.87
SLC44A3Q8N4M1 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
SLC44A3Q8N4M1 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
SLC44A3Q8N4M1 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC20.47■□□□□ 0.87
SLC44A3Q8N4M1 GUK1-204ENST00000366721 689 ntTSL 3 BASIC20.47■□□□□ 0.87
SLC44A3Q8N4M1 PRR31-201ENST00000371629 978 ntTSL 2 BASIC20.47■□□□□ 0.87
SLC44A3Q8N4M1 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC20.47■□□□□ 0.87
SLC44A3Q8N4M1 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
SLC44A3Q8N4M1 CALM3-202ENST00000391918 702 ntTSL 2 BASIC20.47■□□□□ 0.87
SLC44A3Q8N4M1 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC20.47■□□□□ 0.87
SLC44A3Q8N4M1 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC20.47■□□□□ 0.87
SLC44A3Q8N4M1 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC20.47■□□□□ 0.87
SLC44A3Q8N4M1 USF2-205ENST00000594064 1179 ntTSL 2 BASIC20.47■□□□□ 0.87
SLC44A3Q8N4M1 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC20.47■□□□□ 0.87
SLC44A3Q8N4M1 ABBA01031674.1-201ENST00000635145 728 ntBASIC20.47■□□□□ 0.87
SLC44A3Q8N4M1 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
SLC44A3Q8N4M1 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SLC44A3Q8N4M1 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
SLC44A3Q8N4M1 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SLC44A3Q8N4M1 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SLC44A3Q8N4M1 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SLC44A3Q8N4M1 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC20.46■□□□□ 0.87
SLC44A3Q8N4M1 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
SLC44A3Q8N4M1 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SLC44A3Q8N4M1 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
SLC44A3Q8N4M1 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
SLC44A3Q8N4M1 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC20.46■□□□□ 0.87
SLC44A3Q8N4M1 AC026271.3-201ENST00000571884 352 ntBASIC20.46■□□□□ 0.87
SLC44A3Q8N4M1 AL445675.2-201ENST00000620291 557 ntBASIC20.46■□□□□ 0.87
SLC44A3Q8N4M1 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC20.46■□□□□ 0.87
SLC44A3Q8N4M1 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC20.46■□□□□ 0.87
SLC44A3Q8N4M1 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SLC44A3Q8N4M1 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
SLC44A3Q8N4M1 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SLC44A3Q8N4M1 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SLC44A3Q8N4M1 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SLC44A3Q8N4M1 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SLC44A3Q8N4M1 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.87
SLC44A3Q8N4M1 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
SLC44A3Q8N4M1 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC20.45■□□□□ 0.86
SLC44A3Q8N4M1 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SLC44A3Q8N4M1 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
SLC44A3Q8N4M1 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
SLC44A3Q8N4M1 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
SLC44A3Q8N4M1 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC20.45■□□□□ 0.86
SLC44A3Q8N4M1 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SLC44A3Q8N4M1 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC20.45■□□□□ 0.86
SLC44A3Q8N4M1 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SLC44A3Q8N4M1 B3GAT3P1-201ENST00000471720 806 ntBASIC20.45■□□□□ 0.86
SLC44A3Q8N4M1 AC011506.1-201ENST00000474329 610 ntBASIC20.45■□□□□ 0.86
SLC44A3Q8N4M1 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC20.45■□□□□ 0.86
SLC44A3Q8N4M1 C1QL1P1-201ENST00000568105 661 ntBASIC20.45■□□□□ 0.86
SLC44A3Q8N4M1 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
SLC44A3Q8N4M1 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
SLC44A3Q8N4M1 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
SLC44A3Q8N4M1 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC20.44■□□□□ 0.86
SLC44A3Q8N4M1 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
SLC44A3Q8N4M1 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SLC44A3Q8N4M1 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
SLC44A3Q8N4M1 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SLC44A3Q8N4M1 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
SLC44A3Q8N4M1 AK4P3-201ENST00000418260 669 ntBASIC20.44■□□□□ 0.86
SLC44A3Q8N4M1 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC20.44■□□□□ 0.86
SLC44A3Q8N4M1 BX664615.1-201ENST00000443558 458 ntBASIC20.44■□□□□ 0.86
SLC44A3Q8N4M1 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC20.44■□□□□ 0.86
SLC44A3Q8N4M1 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC20.44■□□□□ 0.86
SLC44A3Q8N4M1 DGCR10-201ENST00000609839 495 ntBASIC20.44■□□□□ 0.86
SLC44A3Q8N4M1 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SLC44A3Q8N4M1 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
SLC44A3Q8N4M1 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
SLC44A3Q8N4M1 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
SLC44A3Q8N4M1 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC20.43■□□□□ 0.86
SLC44A3Q8N4M1 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 77.3 ms