Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
USF3Q68DE3 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
USF3Q68DE3 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC17.14■□□□□ 0.33
USF3Q68DE3 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
USF3Q68DE3 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
USF3Q68DE3 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
USF3Q68DE3 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
USF3Q68DE3 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
USF3Q68DE3 AL353708.3-201ENST00000610272 989 ntBASIC17.14■□□□□ 0.33
USF3Q68DE3 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
USF3Q68DE3 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
USF3Q68DE3 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
USF3Q68DE3 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
USF3Q68DE3 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
USF3Q68DE3 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
USF3Q68DE3 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
USF3Q68DE3 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC17.14■□□□□ 0.33
USF3Q68DE3 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
USF3Q68DE3 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
USF3Q68DE3 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
USF3Q68DE3 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
USF3Q68DE3 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
USF3Q68DE3 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC17.13■□□□□ 0.33
USF3Q68DE3 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
USF3Q68DE3 TREX2-204ENST00000370212 861 ntTSL 5 BASIC17.13■□□□□ 0.33
USF3Q68DE3 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
USF3Q68DE3 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
USF3Q68DE3 PRKY-204ENST00000533551 1019 ntBASIC17.13■□□□□ 0.33
USF3Q68DE3 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC17.13■□□□□ 0.33
USF3Q68DE3 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC17.13■□□□□ 0.33
USF3Q68DE3 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
USF3Q68DE3 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC17.13■□□□□ 0.33
USF3Q68DE3 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
USF3Q68DE3 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC17.13■□□□□ 0.33
USF3Q68DE3 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC17.13■□□□□ 0.33
USF3Q68DE3 ME2-216ENST00000639850 2331 ntTSL 5 BASIC17.13■□□□□ 0.33
USF3Q68DE3 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
USF3Q68DE3 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
USF3Q68DE3 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
USF3Q68DE3 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
USF3Q68DE3 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
USF3Q68DE3 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC17.13■□□□□ 0.33
USF3Q68DE3 AC087499.1-201ENST00000418141 1075 ntBASIC17.13■□□□□ 0.33
USF3Q68DE3 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC17.13■□□□□ 0.33
USF3Q68DE3 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC17.13■□□□□ 0.33
USF3Q68DE3 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC17.13■□□□□ 0.33
USF3Q68DE3 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
USF3Q68DE3 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
USF3Q68DE3 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
USF3Q68DE3 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC17.13■□□□□ 0.33
USF3Q68DE3 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC17.13■□□□□ 0.33
USF3Q68DE3 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC17.13■□□□□ 0.33
USF3Q68DE3 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
USF3Q68DE3 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
USF3Q68DE3 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC17.13■□□□□ 0.33
USF3Q68DE3 LINC01521-201ENST00000504184 1943 ntBASIC17.12■□□□□ 0.33
USF3Q68DE3 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
USF3Q68DE3 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC17.12■□□□□ 0.33
USF3Q68DE3 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
USF3Q68DE3 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
USF3Q68DE3 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC17.12■□□□□ 0.33
USF3Q68DE3 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
USF3Q68DE3 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
USF3Q68DE3 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
USF3Q68DE3 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
USF3Q68DE3 KRT18P21-201ENST00000515767 1272 ntBASIC17.12■□□□□ 0.33
USF3Q68DE3 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC17.12■□□□□ 0.33
USF3Q68DE3 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC17.12■□□□□ 0.33
USF3Q68DE3 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC17.12■□□□□ 0.33
USF3Q68DE3 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
USF3Q68DE3 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC17.12■□□□□ 0.33
USF3Q68DE3 RN7SL850P-201ENST00000579959 291 ntBASIC17.12■□□□□ 0.33
USF3Q68DE3 AC012306.2-201ENST00000609350 630 ntBASIC17.12■□□□□ 0.33
USF3Q68DE3 PCDHAC2-203ENST00000615316 3011 ntBASIC17.12■□□□□ 0.33
USF3Q68DE3 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
USF3Q68DE3 AL391422.3-201ENST00000603791 2761 ntBASIC17.12■□□□□ 0.33
USF3Q68DE3 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
USF3Q68DE3 AC011484.1-201ENST00000377652 1995 ntBASIC17.12■□□□□ 0.33
USF3Q68DE3 MED17-221ENST00000639724 2317 ntTSL 5 BASIC17.12■□□□□ 0.33
USF3Q68DE3 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
USF3Q68DE3 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
USF3Q68DE3 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
USF3Q68DE3 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC17.12■□□□□ 0.33
USF3Q68DE3 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
USF3Q68DE3 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC17.12■□□□□ 0.33
USF3Q68DE3 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC17.12■□□□□ 0.33
USF3Q68DE3 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC17.12■□□□□ 0.33
USF3Q68DE3 AP003071.4-201ENST00000562276 1284 ntBASIC17.12■□□□□ 0.33
USF3Q68DE3 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
USF3Q68DE3 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
USF3Q68DE3 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
USF3Q68DE3 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
USF3Q68DE3 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
USF3Q68DE3 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC17.11■□□□□ 0.33
USF3Q68DE3 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
USF3Q68DE3 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
USF3Q68DE3 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
USF3Q68DE3 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
USF3Q68DE3 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC17.11■□□□□ 0.33
USF3Q68DE3 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms