Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC19.52■□□□□ 0.72
PKNOX1P55347 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC19.52■□□□□ 0.72
PKNOX1P55347 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
PKNOX1P55347 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
PKNOX1P55347 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
PKNOX1P55347 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
PKNOX1P55347 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
PKNOX1P55347 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
PKNOX1P55347 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.71
PKNOX1P55347 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC19.52■□□□□ 0.71
PKNOX1P55347 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.71
PKNOX1P55347 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.71
PKNOX1P55347 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.71
PKNOX1P55347 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
PKNOX1P55347 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
PKNOX1P55347 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC19.51■□□□□ 0.71
PKNOX1P55347 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC19.51■□□□□ 0.71
PKNOX1P55347 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
PKNOX1P55347 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
PKNOX1P55347 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC19.51■□□□□ 0.71
PKNOX1P55347 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
PKNOX1P55347 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC19.51■□□□□ 0.71
PKNOX1P55347 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
PKNOX1P55347 STX7-201ENST00000367937 1090 ntTSL 5 BASIC19.51■□□□□ 0.71
PKNOX1P55347 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
PKNOX1P55347 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
PKNOX1P55347 BMP1-204ENST00000397814 836 ntTSL 4 BASIC19.51■□□□□ 0.71
PKNOX1P55347 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC19.51■□□□□ 0.71
PKNOX1P55347 MIR6821-201ENST00000617625 74 ntBASIC19.51■□□□□ 0.71
PKNOX1P55347 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
PKNOX1P55347 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
PKNOX1P55347 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC19.51■□□□□ 0.71
PKNOX1P55347 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC19.51■□□□□ 0.71
PKNOX1P55347 AL691432.2-201ENST00000607222 2038 ntBASIC19.51■□□□□ 0.71
PKNOX1P55347 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
PKNOX1P55347 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
PKNOX1P55347 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
PKNOX1P55347 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
PKNOX1P55347 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC19.5■□□□□ 0.71
PKNOX1P55347 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
PKNOX1P55347 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC19.5■□□□□ 0.71
PKNOX1P55347 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
PKNOX1P55347 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC19.5■□□□□ 0.71
PKNOX1P55347 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
PKNOX1P55347 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
PKNOX1P55347 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
PKNOX1P55347 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
PKNOX1P55347 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC19.5■□□□□ 0.71
PKNOX1P55347 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC19.5■□□□□ 0.71
PKNOX1P55347 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
PKNOX1P55347 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
PKNOX1P55347 SPI1-203ENST00000533030 661 ntTSL 2 BASIC19.5■□□□□ 0.71
PKNOX1P55347 PLD4-205ENST00000553861 667 ntTSL 2 BASIC19.5■□□□□ 0.71
PKNOX1P55347 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
PKNOX1P55347 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
PKNOX1P55347 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
PKNOX1P55347 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
PKNOX1P55347 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
PKNOX1P55347 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
PKNOX1P55347 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
PKNOX1P55347 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC19.5■□□□□ 0.71
PKNOX1P55347 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
PKNOX1P55347 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
PKNOX1P55347 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
PKNOX1P55347 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC19.49■□□□□ 0.71
PKNOX1P55347 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC19.49■□□□□ 0.71
PKNOX1P55347 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
PKNOX1P55347 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
PKNOX1P55347 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
PKNOX1P55347 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
PKNOX1P55347 AC004408.2-201ENST00000623613 2777 ntBASIC19.49■□□□□ 0.71
PKNOX1P55347 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
PKNOX1P55347 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
PKNOX1P55347 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC19.49■□□□□ 0.71
PKNOX1P55347 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC19.49■□□□□ 0.71
PKNOX1P55347 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC19.49■□□□□ 0.71
PKNOX1P55347 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC19.49■□□□□ 0.71
PKNOX1P55347 AC016405.3-201ENST00000607710 860 ntBASIC19.49■□□□□ 0.71
PKNOX1P55347 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC19.49■□□□□ 0.71
PKNOX1P55347 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
PKNOX1P55347 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
PKNOX1P55347 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
PKNOX1P55347 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
PKNOX1P55347 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
PKNOX1P55347 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
PKNOX1P55347 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
PKNOX1P55347 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
PKNOX1P55347 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC19.48■□□□□ 0.71
PKNOX1P55347 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC19.48■□□□□ 0.71
PKNOX1P55347 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
PKNOX1P55347 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC19.48■□□□□ 0.71
PKNOX1P55347 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
PKNOX1P55347 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
PKNOX1P55347 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
PKNOX1P55347 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
PKNOX1P55347 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC19.48■□□□□ 0.71
PKNOX1P55347 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
PKNOX1P55347 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
PKNOX1P55347 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
PKNOX1P55347 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC19.48■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms