Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC23.19■■□□□ 1.3
CTCFP49711 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC23.18■■□□□ 1.3
CTCFP49711 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
CTCFP49711 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC23.18■■□□□ 1.3
CTCFP49711 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
CTCFP49711 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
CTCFP49711 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC23.18■■□□□ 1.3
CTCFP49711 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
CTCFP49711 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
CTCFP49711 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC23.18■■□□□ 1.3
CTCFP49711 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC23.18■■□□□ 1.3
CTCFP49711 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC23.18■■□□□ 1.3
CTCFP49711 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC23.18■■□□□ 1.3
CTCFP49711 AC141257.4-201ENST00000634557 245 ntBASIC23.18■■□□□ 1.3
CTCFP49711 AC136944.6-201ENST00000634818 245 ntBASIC23.18■■□□□ 1.3
CTCFP49711 AC116562.4-202ENST00000641738 218 ntBASIC23.18■■□□□ 1.3
CTCFP49711 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
CTCFP49711 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
CTCFP49711 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
CTCFP49711 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC23.18■■□□□ 1.3
CTCFP49711 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
CTCFP49711 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC23.18■■□□□ 1.3
CTCFP49711 C1orf229-201ENST00000623686 2258 ntBASIC23.17■■□□□ 1.3
CTCFP49711 AC233723.2-201ENST00000623798 2106 ntBASIC23.17■■□□□ 1.3
CTCFP49711 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC23.17■■□□□ 1.3
CTCFP49711 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
CTCFP49711 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC23.17■■□□□ 1.3
CTCFP49711 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC23.17■■□□□ 1.3
CTCFP49711 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC23.17■■□□□ 1.3
CTCFP49711 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC23.17■■□□□ 1.3
CTCFP49711 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC23.17■■□□□ 1.3
CTCFP49711 AL136038.3-201ENST00000561909 1096 ntBASIC23.17■■□□□ 1.3
CTCFP49711 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC23.17■■□□□ 1.3
CTCFP49711 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC23.17■■□□□ 1.3
CTCFP49711 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC23.17■■□□□ 1.3
CTCFP49711 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
CTCFP49711 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CTCFP49711 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC23.16■■□□□ 1.3
CTCFP49711 AL117328.2-201ENST00000624617 1940 ntBASIC23.16■■□□□ 1.3
CTCFP49711 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC23.16■■□□□ 1.3
CTCFP49711 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC23.16■■□□□ 1.3
CTCFP49711 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC23.16■■□□□ 1.3
CTCFP49711 B3GAT3P1-201ENST00000471720 806 ntBASIC23.16■■□□□ 1.3
CTCFP49711 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC23.16■■□□□ 1.3
CTCFP49711 MIR3652-201ENST00000579335 131 ntBASIC23.16■■□□□ 1.3
CTCFP49711 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
CTCFP49711 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC23.16■■□□□ 1.3
CTCFP49711 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC23.16■■□□□ 1.3
CTCFP49711 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CTCFP49711 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CTCFP49711 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CTCFP49711 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC23.16■■□□□ 1.3
CTCFP49711 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC23.15■■□□□ 1.3
CTCFP49711 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
CTCFP49711 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC23.15■■□□□ 1.3
CTCFP49711 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC23.15■■□□□ 1.3
CTCFP49711 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC23.15■■□□□ 1.3
CTCFP49711 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
CTCFP49711 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
CTCFP49711 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC23.15■■□□□ 1.3
CTCFP49711 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC23.15■■□□□ 1.3
CTCFP49711 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC23.15■■□□□ 1.3
CTCFP49711 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC23.15■■□□□ 1.3
CTCFP49711 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC23.15■■□□□ 1.3
CTCFP49711 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
CTCFP49711 GXYLT1P4-201ENST00000613576 1192 ntBASIC23.15■■□□□ 1.3
CTCFP49711 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC23.15■■□□□ 1.3
CTCFP49711 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC23.15■■□□□ 1.3
CTCFP49711 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC23.15■■□□□ 1.3
CTCFP49711 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC23.15■■□□□ 1.3
CTCFP49711 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC23.15■■□□□ 1.3
CTCFP49711 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC23.15■■□□□ 1.3
CTCFP49711 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC23.15■■□□□ 1.3
CTCFP49711 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
CTCFP49711 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
CTCFP49711 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC23.15■■□□□ 1.3
CTCFP49711 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
CTCFP49711 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC23.14■■□□□ 1.29
CTCFP49711 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
CTCFP49711 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
CTCFP49711 HIST1H2APS4-201ENST00000362070 348 ntBASIC23.14■■□□□ 1.29
CTCFP49711 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
CTCFP49711 PPP1R14BP5-201ENST00000440334 435 ntBASIC23.14■■□□□ 1.29
CTCFP49711 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC23.14■■□□□ 1.29
CTCFP49711 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC23.14■■□□□ 1.29
CTCFP49711 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
CTCFP49711 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC23.14■■□□□ 1.29
CTCFP49711 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC23.14■■□□□ 1.29
CTCFP49711 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC23.14■■□□□ 1.29
CTCFP49711 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
CTCFP49711 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
CTCFP49711 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC23.14■■□□□ 1.29
CTCFP49711 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC23.14■■□□□ 1.29
CTCFP49711 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
CTCFP49711 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
CTCFP49711 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC23.13■■□□□ 1.29
CTCFP49711 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
CTCFP49711 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
CTCFP49711 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
CTCFP49711 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC23.13■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms