Protein–RNA interactions for Protein: P39962

YCK3, Casein kinase I homolog 3, yeastyeast

Predictions only

Length 524 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
YCK3P39962 NUP188YML103C 4968 nt2.32□□□□□ -2.04
YCK3P39962 LTE1YAL024C 4308 nt2.32□□□□□ -2.04
YCK3P39962 YPR117WYPR117W 7470 nt2.31□□□□□ -2.04
YCK3P39962 YOR335W-AYOR335W-A 81 nt2.31□□□□□ -2.04
YCK3P39962 ESC1YMR219W 4977 nt2.31□□□□□ -2.04
YCK3P39962 CYR1YJL005W 6081 nt2.3□□□□□ -2.04
YCK3P39962 YMR247W-AYMR247W-A 144 nt2.3□□□□□ -2.04
YCK3P39962 TRA1YHR099W 11235 nt2.29□□□□□ -2.04
YCK3P39962 NUP170YBL079W 4509 nt2.27□□□□□ -2.05
YCK3P39962 tW(CCA)G1tW(CCA)G1 72 nt2.24□□□□□ -2.05
YCK3P39962 tW(CCA)G2tW(CCA)G2 72 nt2.24□□□□□ -2.05
YCK3P39962 tW(CCA)JtW(CCA)J 72 nt2.24□□□□□ -2.05
YCK3P39962 tW(CCA)KtW(CCA)K 72 nt2.24□□□□□ -2.05
YCK3P39962 tW(CCA)MtW(CCA)M 72 nt2.24□□□□□ -2.05
YCK3P39962 tW(CCA)PtW(CCA)P 72 nt2.24□□□□□ -2.05
YCK3P39962 ESL2YKR096W 3588 nt2.24□□□□□ -2.05
YCK3P39962 USO1YDL058W 5373 nt2.24□□□□□ -2.05
YCK3P39962 LAA1YJL207C 6045 nt2.23□□□□□ -2.05
YCK3P39962 UBR2YLR024C 5619 nt2.22□□□□□ -2.05
YCK3P39962 SKI3YPR189W 4299 nt2.21□□□□□ -2.06
YCK3P39962 snR70snR70 164 nt2.2□□□□□ -2.06
YCK3P39962 NUM1YDR150W 8247 nt2.19□□□□□ -2.06
YCK3P39962 IRA2YOL081W 9240 nt2.15□□□□□ -2.07
YCK3P39962 YLR419WYLR419W 4308 nt2.13□□□□□ -2.07
YCK3P39962 THO2YNL139C 4794 nt2.08□□□□□ -2.08
YCK3P39962 snR6snR6 112 nt2.06□□□□□ -2.08
YCK3P39962 VPS13YLL040C 9435 nt2.04□□□□□ -2.08
YCK3P39962 CSF1YLR087C 8877 nt2.03□□□□□ -2.08
YCK3P39962 CDC39YCR093W 6327 nt2.03□□□□□ -2.09
YCK3P39962 PAU9YBL108C-A 129 nt2.02□□□□□ -2.09
YCK3P39962 YOR192C-BYOR192C-B 5313 nt2.02□□□□□ -2.09
YCK3P39962 SEC16YPL085W 6588 nt2.01□□□□□ -2.09
YCK3P39962 YJR029WYJR029W 5268 nt2□□□□□ -2.09
YCK3P39962 YML100W-AYML100W-A 174 nt1.97□□□□□ -2.09
YCK3P39962 YJL113WYJL113W 4647 nt1.96□□□□□ -2.1
YCK3P39962 snR73snR73 106 nt1.96□□□□□ -2.1
YCK3P39962 PEP1YBL017C 4740 nt1.96□□□□□ -2.1
YCK3P39962 PMD1YER132C 5262 nt1.94□□□□□ -2.1
YCK3P39962 ESP1YGR098C 4893 nt1.86□□□□□ -2.11
YCK3P39962 YMR045CYMR045C 5268 nt1.85□□□□□ -2.11
YCK3P39962 YBL100W-BYBL100W-B 5313 nt1.84□□□□□ -2.11
YCK3P39962 HKR1YDR420W 5409 nt1.84□□□□□ -2.11
YCK3P39962 MYO1YHR023W 5787 nt1.84□□□□□ -2.12
YCK3P39962 DNF3YMR162C 4971 nt1.8□□□□□ -2.12
YCK3P39962 IML1YJR138W 4755 nt1.78□□□□□ -2.13
YCK3P39962 BUD3YCL014W 4911 nt1.76□□□□□ -2.13
YCK3P39962 FKS1YLR342W 5631 nt1.76□□□□□ -2.13
YCK3P39962 YHR214C-BYHR214C-B 5382 nt1.74□□□□□ -2.13
YCK3P39962 YPR137C-BYPR137C-B 5268 nt1.73□□□□□ -2.13
YCK3P39962 FMP27YLR454W 7887 nt1.71□□□□□ -2.14
YCK3P39962 FIG2YCR089W 4830 nt1.71□□□□□ -2.14
YCK3P39962 SCC2YDR180W 4482 nt1.69□□□□□ -2.14
YCK3P39962 TMA7YLR262C-A 195 nt1.65□□□□□ -2.15
YCK3P39962 FAB1YFR019W 6837 nt1.64□□□□□ -2.15
YCK3P39962 BRR2YER172C 6492 nt1.61□□□□□ -2.15
YCK3P39962 tQ(UUG)E2tQ(UUG)E2 72 nt1.6□□□□□ -2.15
YCK3P39962 snR161snR161 161 nt1.59□□□□□ -2.15
YCK3P39962 YMR272W-BYMR272W-B 108 nt1.58□□□□□ -2.16
YCK3P39962 snR87snR87 109 nt1.57□□□□□ -2.16
YCK3P39962 YOR186C-AYOR186C-A 210 nt1.57□□□□□ -2.16
YCK3P39962 PAU24YBR301W 363 nt1.57□□□□□ -2.16
YCK3P39962 IQG1YPL242C 4488 nt1.55□□□□□ -2.16
YCK3P39962 tT(UGU)HtT(UGU)H 72 nt1.53□□□□□ -2.16
YCK3P39962 RKR1YMR247C 4689 nt1.52□□□□□ -2.17
YCK3P39962 MLP1YKR095W 5628 nt1.52□□□□□ -2.17
YCK3P39962 VPS15YBR097W 4365 nt1.51□□□□□ -2.17
YCK3P39962 BEM2YER155C 6504 nt1.47□□□□□ -2.17
YCK3P39962 YMR272W-AYMR272W-A 114 nt1.47□□□□□ -2.17
YCK3P39962 IRA1YBR140C 9279 nt1.39□□□□□ -2.19
YCK3P39962 MEC1YBR136W 7107 nt1.37□□□□□ -2.19
YCK3P39962 CCH1YGR217W 6120 nt1.26□□□□□ -2.21
YCK3P39962 snR128snR128 126 nt1.21□□□□□ -2.22
YCK3P39962 URB1YKL014C 5295 nt1.2□□□□□ -2.22
YCK3P39962 YMR315W-AYMR315W-A 108 nt1.17□□□□□ -2.22
YCK3P39962 tA(UGC)QtA(UGC)Q 76 nt1.15□□□□□ -2.23
YCK3P39962 UTP10YJL109C 5310 nt1.15□□□□□ -2.23
YCK3P39962 tH(GUG)E1tH(GUG)E1 72 nt1.14□□□□□ -2.23
YCK3P39962 tH(GUG)E2tH(GUG)E2 72 nt1.14□□□□□ -2.23
YCK3P39962 tH(GUG)G1tH(GUG)G1 72 nt1.14□□□□□ -2.23
YCK3P39962 tH(GUG)G2tH(GUG)G2 72 nt1.14□□□□□ -2.23
YCK3P39962 tH(GUG)HtH(GUG)H 72 nt1.14□□□□□ -2.23
YCK3P39962 tH(GUG)KtH(GUG)K 72 nt1.14□□□□□ -2.23
YCK3P39962 tH(GUG)MtH(GUG)M 72 nt1.14□□□□□ -2.23
YCK3P39962 UTP20YBL004W 7482 nt1.12□□□□□ -2.23
YCK3P39962 YHL009W-BYHL009W-B 5409 nt1.12□□□□□ -2.23
YCK3P39962 DOP1YDR141C 5097 nt1.06□□□□□ -2.24
YCK3P39962 CDC65tQ(CUG)M 72 nt1.02□□□□□ -2.25
YCK3P39962 tV(UAC)BtV(UAC)B 74 nt0.97□□□□□ -2.25
YCK3P39962 tV(UAC)DtV(UAC)D 74 nt0.97□□□□□ -2.25
YCK3P39962 EMT1tM(CAU)D 73 nt0.84□□□□□ -2.27
YCK3P39962 EMT5tM(CAU)J1 73 nt0.84□□□□□ -2.27
YCK3P39962 EMT3tM(CAU)J2 73 nt0.84□□□□□ -2.27
YCK3P39962 EMT4tM(CAU)M 73 nt0.84□□□□□ -2.27
YCK3P39962 EMT2tM(CAU)O2 73 nt0.84□□□□□ -2.27
YCK3P39962 YOR309CYOR309C 381 nt0.82□□□□□ -2.28
YCK3P39962 YPR159C-AYPR159C-A 102 nt0.8□□□□□ -2.28
YCK3P39962 tT(AGU)BtT(AGU)B 73 nt0.57□□□□□ -2.32
YCK3P39962 tT(AGU)CtT(AGU)C 73 nt0.57□□□□□ -2.32
YCK3P39962 tT(AGU)DtT(AGU)D 73 nt0.57□□□□□ -2.32
YCK3P39962 tT(AGU)HtT(AGU)H 73 nt0.57□□□□□ -2.32
Retrieved 100 of 7,029 protein–RNA pairs in 10 ms