Protein–RNA interactions for Protein: P28288

ABCD3, ATP-binding cassette sub-family D member 3, humanhuman

Predictions only

Length 659 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCD3P28288 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
ABCD3P28288 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
ABCD3P28288 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
ABCD3P28288 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
ABCD3P28288 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC18.39■□□□□ 0.53
ABCD3P28288 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC18.39■□□□□ 0.53
ABCD3P28288 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
ABCD3P28288 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
ABCD3P28288 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC18.39■□□□□ 0.53
ABCD3P28288 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
ABCD3P28288 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
ABCD3P28288 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC18.38■□□□□ 0.53
ABCD3P28288 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC18.38■□□□□ 0.53
ABCD3P28288 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
ABCD3P28288 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
ABCD3P28288 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC18.38■□□□□ 0.53
ABCD3P28288 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
ABCD3P28288 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
ABCD3P28288 FAM201B-201ENST00000458407 597 ntBASIC18.38■□□□□ 0.53
ABCD3P28288 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC18.38■□□□□ 0.53
ABCD3P28288 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC18.38■□□□□ 0.53
ABCD3P28288 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC18.38■□□□□ 0.53
ABCD3P28288 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
ABCD3P28288 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
ABCD3P28288 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
ABCD3P28288 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
ABCD3P28288 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
ABCD3P28288 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC18.38■□□□□ 0.53
ABCD3P28288 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
ABCD3P28288 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
ABCD3P28288 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
ABCD3P28288 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC18.38■□□□□ 0.53
ABCD3P28288 AC099778.1-201ENST00000568593 1911 ntBASIC18.37■□□□□ 0.53
ABCD3P28288 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
ABCD3P28288 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
ABCD3P28288 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
ABCD3P28288 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
ABCD3P28288 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC18.37■□□□□ 0.53
ABCD3P28288 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
ABCD3P28288 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
ABCD3P28288 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
ABCD3P28288 POM121L13P-201ENST00000422362 380 ntBASIC18.37■□□□□ 0.53
ABCD3P28288 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC18.37■□□□□ 0.53
ABCD3P28288 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC18.37■□□□□ 0.53
ABCD3P28288 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC18.37■□□□□ 0.53
ABCD3P28288 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC18.37■□□□□ 0.53
ABCD3P28288 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
ABCD3P28288 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
ABCD3P28288 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC18.37■□□□□ 0.53
ABCD3P28288 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
ABCD3P28288 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
ABCD3P28288 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
ABCD3P28288 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC18.37■□□□□ 0.53
ABCD3P28288 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC18.37■□□□□ 0.53
ABCD3P28288 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
ABCD3P28288 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
ABCD3P28288 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC18.37■□□□□ 0.53
ABCD3P28288 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC18.37■□□□□ 0.53
ABCD3P28288 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC18.37■□□□□ 0.53
ABCD3P28288 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
ABCD3P28288 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC18.37■□□□□ 0.53
ABCD3P28288 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
ABCD3P28288 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
ABCD3P28288 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
ABCD3P28288 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
ABCD3P28288 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
ABCD3P28288 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
ABCD3P28288 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC18.36■□□□□ 0.53
ABCD3P28288 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC18.36■□□□□ 0.53
ABCD3P28288 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC18.36■□□□□ 0.53
ABCD3P28288 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
ABCD3P28288 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
ABCD3P28288 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC18.36■□□□□ 0.53
ABCD3P28288 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC18.36■□□□□ 0.53
ABCD3P28288 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
ABCD3P28288 CD37-204ENST00000535669 1674 ntTSL 2 BASIC18.36■□□□□ 0.53
ABCD3P28288 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC18.36■□□□□ 0.53
ABCD3P28288 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC18.36■□□□□ 0.53
ABCD3P28288 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC18.36■□□□□ 0.53
ABCD3P28288 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
ABCD3P28288 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC18.35■□□□□ 0.53
ABCD3P28288 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
ABCD3P28288 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
ABCD3P28288 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC18.35■□□□□ 0.53
ABCD3P28288 USP39-204ENST00000409766 2033 ntTSL 2 BASIC18.35■□□□□ 0.53
ABCD3P28288 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
ABCD3P28288 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
ABCD3P28288 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
ABCD3P28288 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
ABCD3P28288 AC124283.5-201ENST00000624661 1809 ntBASIC18.35■□□□□ 0.53
ABCD3P28288 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC18.35■□□□□ 0.53
ABCD3P28288 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC18.35■□□□□ 0.53
ABCD3P28288 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
ABCD3P28288 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
ABCD3P28288 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
ABCD3P28288 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
ABCD3P28288 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC18.35■□□□□ 0.53
ABCD3P28288 ABHD17AP1-201ENST00000358206 933 ntBASIC18.35■□□□□ 0.53
ABCD3P28288 KRT17P3-201ENST00000420566 1262 ntBASIC18.35■□□□□ 0.53
ABCD3P28288 RPS2P52-201ENST00000469610 820 ntBASIC18.35■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 61 ms