Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
MSH3P20585 KRT8P17-201ENST00000453110 1448 ntBASIC19.84■□□□□ 0.77
MSH3P20585 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
MSH3P20585 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
MSH3P20585 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC19.84■□□□□ 0.77
MSH3P20585 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
MSH3P20585 AL512408.1-201ENST00000569378 2000 ntBASIC19.83■□□□□ 0.77
MSH3P20585 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC19.83■□□□□ 0.77
MSH3P20585 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
MSH3P20585 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
MSH3P20585 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
MSH3P20585 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
MSH3P20585 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC19.83■□□□□ 0.77
MSH3P20585 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC19.83■□□□□ 0.77
MSH3P20585 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC19.83■□□□□ 0.77
MSH3P20585 AC005829.2-201ENST00000571422 1056 ntBASIC19.83■□□□□ 0.77
MSH3P20585 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC19.83■□□□□ 0.76
MSH3P20585 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
MSH3P20585 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC19.83■□□□□ 0.76
MSH3P20585 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
MSH3P20585 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
MSH3P20585 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
MSH3P20585 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
MSH3P20585 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC19.83■□□□□ 0.76
MSH3P20585 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
MSH3P20585 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
MSH3P20585 AL162377.1-201ENST00000618844 1793 ntBASIC19.83■□□□□ 0.76
MSH3P20585 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
MSH3P20585 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC19.82■□□□□ 0.76
MSH3P20585 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
MSH3P20585 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
MSH3P20585 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC19.82■□□□□ 0.76
MSH3P20585 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
MSH3P20585 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
MSH3P20585 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
MSH3P20585 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC19.82■□□□□ 0.76
MSH3P20585 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
MSH3P20585 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC19.82■□□□□ 0.76
MSH3P20585 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC19.82■□□□□ 0.76
MSH3P20585 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC19.82■□□□□ 0.76
MSH3P20585 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC19.82■□□□□ 0.76
MSH3P20585 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
MSH3P20585 CD99P1-205ENST00000527459 561 ntBASIC19.82■□□□□ 0.76
MSH3P20585 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
MSH3P20585 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
MSH3P20585 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
MSH3P20585 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC19.82■□□□□ 0.76
MSH3P20585 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC19.82■□□□□ 0.76
MSH3P20585 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC19.82■□□□□ 0.76
MSH3P20585 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC19.82■□□□□ 0.76
MSH3P20585 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
MSH3P20585 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
MSH3P20585 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
MSH3P20585 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
MSH3P20585 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
MSH3P20585 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
MSH3P20585 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC19.81■□□□□ 0.76
MSH3P20585 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
MSH3P20585 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
MSH3P20585 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC19.81■□□□□ 0.76
MSH3P20585 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC19.81■□□□□ 0.76
MSH3P20585 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
MSH3P20585 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
MSH3P20585 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
MSH3P20585 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC19.81■□□□□ 0.76
MSH3P20585 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC19.81■□□□□ 0.76
MSH3P20585 OR2A1-AS1-207ENST00000486094 819 ntBASIC19.81■□□□□ 0.76
MSH3P20585 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
MSH3P20585 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC19.81■□□□□ 0.76
MSH3P20585 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC19.81■□□□□ 0.76
MSH3P20585 TBCB-214ENST00000629269 413 ntTSL 5 BASIC19.81■□□□□ 0.76
MSH3P20585 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
MSH3P20585 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC19.81■□□□□ 0.76
MSH3P20585 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC19.81■□□□□ 0.76
MSH3P20585 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
MSH3P20585 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
MSH3P20585 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC19.81■□□□□ 0.76
MSH3P20585 STX6-204ENST00000542060 4809 ntTSL 2 BASIC19.81■□□□□ 0.76
MSH3P20585 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
MSH3P20585 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
MSH3P20585 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
MSH3P20585 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
MSH3P20585 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
MSH3P20585 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
MSH3P20585 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
MSH3P20585 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
MSH3P20585 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC19.8■□□□□ 0.76
MSH3P20585 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC19.8■□□□□ 0.76
MSH3P20585 RER1-204ENST00000378518 522 ntTSL 3 BASIC19.8■□□□□ 0.76
MSH3P20585 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
MSH3P20585 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
MSH3P20585 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC19.8■□□□□ 0.76
MSH3P20585 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC19.8■□□□□ 0.76
MSH3P20585 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC19.8■□□□□ 0.76
MSH3P20585 AC006557.6-201ENST00000623071 864 ntBASIC19.8■□□□□ 0.76
MSH3P20585 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
MSH3P20585 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
MSH3P20585 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
MSH3P20585 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
MSH3P20585 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms