Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
SHOX2O60902 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC19.99■□□□□ 0.79
SHOX2O60902 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SHOX2O60902 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
SHOX2O60902 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SHOX2O60902 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC19.98■□□□□ 0.79
SHOX2O60902 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SHOX2O60902 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
SHOX2O60902 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SHOX2O60902 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC19.98■□□□□ 0.79
SHOX2O60902 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC19.98■□□□□ 0.79
SHOX2O60902 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
SHOX2O60902 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
SHOX2O60902 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC19.98■□□□□ 0.79
SHOX2O60902 SMUG1P1-201ENST00000590640 811 ntBASIC19.98■□□□□ 0.79
SHOX2O60902 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
SHOX2O60902 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
SHOX2O60902 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SHOX2O60902 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SHOX2O60902 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SHOX2O60902 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SHOX2O60902 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC19.97■□□□□ 0.79
SHOX2O60902 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
SHOX2O60902 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
SHOX2O60902 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
SHOX2O60902 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
SHOX2O60902 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
SHOX2O60902 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
SHOX2O60902 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SHOX2O60902 AK3-203ENST00000447596 705 ntTSL 2 BASIC19.97■□□□□ 0.79
SHOX2O60902 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC19.97■□□□□ 0.79
SHOX2O60902 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC19.97■□□□□ 0.79
SHOX2O60902 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
SHOX2O60902 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC19.97■□□□□ 0.79
SHOX2O60902 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SHOX2O60902 AL161938.1-201ENST00000569833 2180 ntBASIC19.97■□□□□ 0.79
SHOX2O60902 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
SHOX2O60902 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SHOX2O60902 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC19.97■□□□□ 0.79
SHOX2O60902 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
SHOX2O60902 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SHOX2O60902 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
SHOX2O60902 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC19.96■□□□□ 0.79
SHOX2O60902 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SHOX2O60902 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
SHOX2O60902 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC19.96■□□□□ 0.79
SHOX2O60902 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
SHOX2O60902 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
SHOX2O60902 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC19.96■□□□□ 0.79
SHOX2O60902 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
SHOX2O60902 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SHOX2O60902 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
SHOX2O60902 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SHOX2O60902 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC19.95■□□□□ 0.79
SHOX2O60902 ASL-203ENST00000380839 1765 ntTSL 5 BASIC19.95■□□□□ 0.78
SHOX2O60902 AL031598.1-201ENST00000561511 1773 ntBASIC19.95■□□□□ 0.78
SHOX2O60902 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SHOX2O60902 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
SHOX2O60902 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SHOX2O60902 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC19.95■□□□□ 0.78
SHOX2O60902 GOLGA2P11-201ENST00000562660 1621 ntBASIC19.95■□□□□ 0.78
SHOX2O60902 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
SHOX2O60902 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
SHOX2O60902 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SHOX2O60902 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SHOX2O60902 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SHOX2O60902 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC19.95■□□□□ 0.78
SHOX2O60902 AC099791.2-201ENST00000605725 427 ntBASIC19.95■□□□□ 0.78
SHOX2O60902 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
SHOX2O60902 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC19.95■□□□□ 0.78
SHOX2O60902 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC19.95■□□□□ 0.78
SHOX2O60902 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
SHOX2O60902 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
SHOX2O60902 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC19.95■□□□□ 0.78
SHOX2O60902 AC139713.2-201ENST00000641328 2723 ntBASIC19.95■□□□□ 0.78
SHOX2O60902 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC19.95■□□□□ 0.78
SHOX2O60902 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC19.94■□□□□ 0.78
SHOX2O60902 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SHOX2O60902 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SHOX2O60902 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
SHOX2O60902 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
SHOX2O60902 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
SHOX2O60902 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
SHOX2O60902 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
SHOX2O60902 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC19.94■□□□□ 0.78
SHOX2O60902 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC19.94■□□□□ 0.78
SHOX2O60902 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
SHOX2O60902 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC19.94■□□□□ 0.78
SHOX2O60902 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SHOX2O60902 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SHOX2O60902 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
SHOX2O60902 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
SHOX2O60902 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
SHOX2O60902 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SHOX2O60902 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SHOX2O60902 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
SHOX2O60902 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
SHOX2O60902 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC19.93■□□□□ 0.78
SHOX2O60902 AC061975.6-201ENST00000579045 1553 ntBASIC19.93■□□□□ 0.78
SHOX2O60902 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms