Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LMX1BO60663 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
LMX1BO60663 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LMX1BO60663 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
LMX1BO60663 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LMX1BO60663 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LMX1BO60663 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
LMX1BO60663 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
LMX1BO60663 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC17.5■□□□□ 0.39
LMX1BO60663 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
LMX1BO60663 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC17.5■□□□□ 0.39
LMX1BO60663 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
LMX1BO60663 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
LMX1BO60663 AC087289.5-201ENST00000586076 3175 ntBASIC17.5■□□□□ 0.39
LMX1BO60663 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LMX1BO60663 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LMX1BO60663 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
LMX1BO60663 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC17.5■□□□□ 0.39
LMX1BO60663 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
LMX1BO60663 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
LMX1BO60663 CD44-222ENST00000526025 1052 ntTSL 2 BASIC17.5■□□□□ 0.39
LMX1BO60663 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
LMX1BO60663 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC17.5■□□□□ 0.39
LMX1BO60663 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
LMX1BO60663 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LMX1BO60663 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LMX1BO60663 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
LMX1BO60663 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC17.5■□□□□ 0.39
LMX1BO60663 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LMX1BO60663 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LMX1BO60663 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
LMX1BO60663 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LMX1BO60663 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
LMX1BO60663 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC17.49■□□□□ 0.39
LMX1BO60663 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC17.49■□□□□ 0.39
LMX1BO60663 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
LMX1BO60663 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
LMX1BO60663 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC17.49■□□□□ 0.39
LMX1BO60663 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
LMX1BO60663 H19-201ENST00000411754 1788 ntTSL 5 BASIC17.49■□□□□ 0.39
LMX1BO60663 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
LMX1BO60663 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
LMX1BO60663 UQCRFS1P1-201ENST00000435169 820 ntBASIC17.49■□□□□ 0.39
LMX1BO60663 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
LMX1BO60663 VMO1-204ENST00000441199 741 ntTSL 2 BASIC17.49■□□□□ 0.39
LMX1BO60663 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC17.49■□□□□ 0.39
LMX1BO60663 AC007322.4-201ENST00000509611 723 ntBASIC17.49■□□□□ 0.39
LMX1BO60663 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC17.49■□□□□ 0.39
LMX1BO60663 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC17.49■□□□□ 0.39
LMX1BO60663 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
LMX1BO60663 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
LMX1BO60663 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
LMX1BO60663 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
LMX1BO60663 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC17.48■□□□□ 0.39
LMX1BO60663 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC17.48■□□□□ 0.39
LMX1BO60663 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
LMX1BO60663 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC17.48■□□□□ 0.39
LMX1BO60663 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
LMX1BO60663 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC17.48■□□□□ 0.39
LMX1BO60663 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
LMX1BO60663 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC17.48■□□□□ 0.39
LMX1BO60663 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LMX1BO60663 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC17.48■□□□□ 0.39
LMX1BO60663 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
LMX1BO60663 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
LMX1BO60663 AL512625.2-201ENST00000417533 625 ntBASIC17.48■□□□□ 0.39
LMX1BO60663 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC17.48■□□□□ 0.39
LMX1BO60663 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
LMX1BO60663 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC17.48■□□□□ 0.39
LMX1BO60663 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LMX1BO60663 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
LMX1BO60663 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LMX1BO60663 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
LMX1BO60663 BX119927.1-201ENST00000636596 1552 ntBASIC17.48■□□□□ 0.39
LMX1BO60663 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LMX1BO60663 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LMX1BO60663 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LMX1BO60663 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC17.48■□□□□ 0.39
LMX1BO60663 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LMX1BO60663 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
LMX1BO60663 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LMX1BO60663 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC17.47■□□□□ 0.39
LMX1BO60663 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC17.47■□□□□ 0.39
LMX1BO60663 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC17.47■□□□□ 0.39
LMX1BO60663 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LMX1BO60663 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LMX1BO60663 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LMX1BO60663 SAPCD2P1-201ENST00000395413 1184 ntBASIC17.47■□□□□ 0.39
LMX1BO60663 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC17.47■□□□□ 0.39
LMX1BO60663 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC17.47■□□□□ 0.39
LMX1BO60663 IRX5-204ENST00000560154 879 ntTSL 5 BASIC17.47■□□□□ 0.39
LMX1BO60663 FAM21FP-204ENST00000608637 956 ntBASIC17.47■□□□□ 0.39
LMX1BO60663 AC092118.2-201ENST00000613495 667 ntBASIC17.47■□□□□ 0.39
LMX1BO60663 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
LMX1BO60663 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC17.47■□□□□ 0.39
LMX1BO60663 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC17.47■□□□□ 0.39
LMX1BO60663 MARS-234ENST00000630571 216 ntTSL 5 BASIC17.47■□□□□ 0.39
LMX1BO60663 MARS-235ENST00000630803 183 ntTSL 3 BASIC17.47■□□□□ 0.39
LMX1BO60663 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
LMX1BO60663 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms