Protein–RNA interactions for Protein: Q9Y5I1

PCDHA11, Protocadherin alpha-11, humanhuman

Predictions only

Length 949 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA11Q9Y5I1 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC28.53■■■□□ 2.16
PCDHA11Q9Y5I1 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC28.53■■■□□ 2.16
PCDHA11Q9Y5I1 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC28.53■■■□□ 2.16
PCDHA11Q9Y5I1 CEP120-209ENST00000515110 606 ntTSL 3 BASIC28.53■■■□□ 2.16
PCDHA11Q9Y5I1 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC28.53■■■□□ 2.16
PCDHA11Q9Y5I1 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC28.52■■■□□ 2.16
PCDHA11Q9Y5I1 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC28.51■■■□□ 2.15
PCDHA11Q9Y5I1 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC28.51■■■□□ 2.15
PCDHA11Q9Y5I1 NTF6A-201ENST00000591175 560 ntBASIC28.51■■■□□ 2.15
PCDHA11Q9Y5I1 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC28.51■■■□□ 2.15
PCDHA11Q9Y5I1 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC28.51■■■□□ 2.15
PCDHA11Q9Y5I1 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC28.5■■■□□ 2.15
PCDHA11Q9Y5I1 AC012354.3-201ENST00000623734 483 ntBASIC28.5■■■□□ 2.15
PCDHA11Q9Y5I1 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC28.5■■■□□ 2.15
PCDHA11Q9Y5I1 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC28.49■■■□□ 2.15
PCDHA11Q9Y5I1 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC28.48■■■□□ 2.15
PCDHA11Q9Y5I1 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC28.48■■■□□ 2.15
PCDHA11Q9Y5I1 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
PCDHA11Q9Y5I1 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
PCDHA11Q9Y5I1 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC28.46■■■□□ 2.15
PCDHA11Q9Y5I1 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC28.46■■■□□ 2.15
PCDHA11Q9Y5I1 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC28.46■■■□□ 2.15
PCDHA11Q9Y5I1 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC28.45■■■□□ 2.14
PCDHA11Q9Y5I1 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC28.45■■■□□ 2.14
PCDHA11Q9Y5I1 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC28.44■■■□□ 2.14
PCDHA11Q9Y5I1 ST7-202ENST00000323984 2142 ntTSL 5 BASIC28.44■■■□□ 2.14
PCDHA11Q9Y5I1 ST7-207ENST00000393449 2127 ntTSL 5 BASIC28.44■■■□□ 2.14
PCDHA11Q9Y5I1 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC28.44■■■□□ 2.14
PCDHA11Q9Y5I1 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC28.43■■■□□ 2.14
PCDHA11Q9Y5I1 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC28.43■■■□□ 2.14
PCDHA11Q9Y5I1 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC28.43■■■□□ 2.14
PCDHA11Q9Y5I1 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC28.43■■■□□ 2.14
PCDHA11Q9Y5I1 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC28.42■■■□□ 2.14
PCDHA11Q9Y5I1 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC28.41■■■□□ 2.14
PCDHA11Q9Y5I1 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC28.41■■■□□ 2.14
PCDHA11Q9Y5I1 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC28.41■■■□□ 2.14
PCDHA11Q9Y5I1 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC28.41■■■□□ 2.14
PCDHA11Q9Y5I1 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
PCDHA11Q9Y5I1 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC28.4■■■□□ 2.14
PCDHA11Q9Y5I1 AC022413.1-201ENST00000624602 984 ntBASIC28.4■■■□□ 2.14
PCDHA11Q9Y5I1 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC28.4■■■□□ 2.14
PCDHA11Q9Y5I1 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC28.39■■■□□ 2.14
PCDHA11Q9Y5I1 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.14
PCDHA11Q9Y5I1 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
PCDHA11Q9Y5I1 HES4-202ENST00000428771 1040 ntTSL 2 BASIC28.38■■■□□ 2.13
PCDHA11Q9Y5I1 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
PCDHA11Q9Y5I1 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC28.37■■■□□ 2.13
PCDHA11Q9Y5I1 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
PCDHA11Q9Y5I1 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC28.37■■■□□ 2.13
PCDHA11Q9Y5I1 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC28.37■■■□□ 2.13
PCDHA11Q9Y5I1 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
PCDHA11Q9Y5I1 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC28.36■■■□□ 2.13
PCDHA11Q9Y5I1 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC28.36■■■□□ 2.13
PCDHA11Q9Y5I1 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC28.36■■■□□ 2.13
PCDHA11Q9Y5I1 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
PCDHA11Q9Y5I1 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC28.35■■■□□ 2.13
PCDHA11Q9Y5I1 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
PCDHA11Q9Y5I1 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC28.35■■■□□ 2.13
PCDHA11Q9Y5I1 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC28.34■■■□□ 2.13
PCDHA11Q9Y5I1 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC28.34■■■□□ 2.13
PCDHA11Q9Y5I1 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC28.34■■■□□ 2.13
PCDHA11Q9Y5I1 LINC00273-201ENST00000539813 1452 ntBASIC28.34■■■□□ 2.13
PCDHA11Q9Y5I1 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC28.33■■■□□ 2.13
PCDHA11Q9Y5I1 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
PCDHA11Q9Y5I1 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
PCDHA11Q9Y5I1 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC28.32■■■□□ 2.12
PCDHA11Q9Y5I1 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC28.32■■■□□ 2.12
PCDHA11Q9Y5I1 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
PCDHA11Q9Y5I1 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC28.32■■■□□ 2.12
PCDHA11Q9Y5I1 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC28.32■■■□□ 2.12
PCDHA11Q9Y5I1 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
PCDHA11Q9Y5I1 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC28.29■■■□□ 2.12
PCDHA11Q9Y5I1 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC28.29■■■□□ 2.12
PCDHA11Q9Y5I1 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
PCDHA11Q9Y5I1 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC28.29■■■□□ 2.12
PCDHA11Q9Y5I1 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
PCDHA11Q9Y5I1 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC28.28■■■□□ 2.12
PCDHA11Q9Y5I1 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
PCDHA11Q9Y5I1 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
PCDHA11Q9Y5I1 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
PCDHA11Q9Y5I1 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC28.27■■■□□ 2.12
PCDHA11Q9Y5I1 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC28.26■■■□□ 2.11
PCDHA11Q9Y5I1 AL033527.3-201ENST00000566366 1196 ntBASIC28.26■■■□□ 2.11
PCDHA11Q9Y5I1 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC28.26■■■□□ 2.11
PCDHA11Q9Y5I1 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC28.26■■■□□ 2.11
PCDHA11Q9Y5I1 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC28.26■■■□□ 2.11
PCDHA11Q9Y5I1 AC018358.1-201ENST00000631079 1402 ntBASIC28.26■■■□□ 2.11
PCDHA11Q9Y5I1 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
PCDHA11Q9Y5I1 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC28.25■■■□□ 2.11
PCDHA11Q9Y5I1 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
PCDHA11Q9Y5I1 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC28.24■■■□□ 2.11
PCDHA11Q9Y5I1 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
PCDHA11Q9Y5I1 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC28.24■■■□□ 2.11
PCDHA11Q9Y5I1 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC28.23■■■□□ 2.11
PCDHA11Q9Y5I1 AC008813.1-201ENST00000536597 885 ntBASIC28.23■■■□□ 2.11
PCDHA11Q9Y5I1 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC28.23■■■□□ 2.11
PCDHA11Q9Y5I1 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC28.22■■■□□ 2.11
PCDHA11Q9Y5I1 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
PCDHA11Q9Y5I1 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC28.2■■■□□ 2.1
PCDHA11Q9Y5I1 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC28.2■■■□□ 2.1
Retrieved 100 of 98,524 protein–RNA pairs in 18.3 ms