Protein–RNA interactions for Protein: Q9H0F5

RNF38, E3 ubiquitin-protein ligase RNF38, humanhuman

Predictions only

Length 515 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF38Q9H0F5 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC27.14■■□□□ 1.94
RNF38Q9H0F5 LINC00273-201ENST00000539813 1452 ntBASIC27.14■■□□□ 1.94
RNF38Q9H0F5 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
RNF38Q9H0F5 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC27.14■■□□□ 1.94
RNF38Q9H0F5 DUX4L13-201ENST00000554103 1267 ntBASIC27.14■■□□□ 1.94
RNF38Q9H0F5 MIR4449-201ENST00000578365 66 ntBASIC27.14■■□□□ 1.94
RNF38Q9H0F5 DUX4L15-201ENST00000611059 1267 ntBASIC27.14■■□□□ 1.94
RNF38Q9H0F5 DUX4L23-201ENST00000615195 1269 ntBASIC27.14■■□□□ 1.94
RNF38Q9H0F5 DUX4L24-201ENST00000617576 1269 ntBASIC27.14■■□□□ 1.94
RNF38Q9H0F5 DUX4L22-201ENST00000618238 1269 ntBASIC27.14■■□□□ 1.94
RNF38Q9H0F5 DUX4L20-201ENST00000619712 1269 ntBASIC27.14■■□□□ 1.94
RNF38Q9H0F5 DUX4L21-201ENST00000622058 1269 ntBASIC27.14■■□□□ 1.94
RNF38Q9H0F5 DUX4L10-201ENST00000622460 1267 ntBASIC27.14■■□□□ 1.94
RNF38Q9H0F5 DUX4L25-201ENST00000624915 1269 ntBASIC27.14■■□□□ 1.94
RNF38Q9H0F5 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC27.13■■□□□ 1.93
RNF38Q9H0F5 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
RNF38Q9H0F5 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC27.13■■□□□ 1.93
RNF38Q9H0F5 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
RNF38Q9H0F5 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
RNF38Q9H0F5 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC27.12■■□□□ 1.93
RNF38Q9H0F5 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC27.12■■□□□ 1.93
RNF38Q9H0F5 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC27.12■■□□□ 1.93
RNF38Q9H0F5 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC27.12■■□□□ 1.93
RNF38Q9H0F5 AC127502.1-201ENST00000399971 1502 ntBASIC27.11■■□□□ 1.93
RNF38Q9H0F5 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
RNF38Q9H0F5 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC27.1■■□□□ 1.93
RNF38Q9H0F5 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC27.1■■□□□ 1.93
RNF38Q9H0F5 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
RNF38Q9H0F5 CHML-204ENST00000638121 920 ntTSL 2 BASIC27.1■■□□□ 1.93
RNF38Q9H0F5 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC27.09■■□□□ 1.93
RNF38Q9H0F5 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC27.09■■□□□ 1.93
RNF38Q9H0F5 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC27.08■■□□□ 1.93
RNF38Q9H0F5 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC27.08■■□□□ 1.93
RNF38Q9H0F5 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC27.08■■□□□ 1.93
RNF38Q9H0F5 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC27.07■■□□□ 1.92
RNF38Q9H0F5 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC27.07■■□□□ 1.92
RNF38Q9H0F5 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
RNF38Q9H0F5 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC27.06■■□□□ 1.92
RNF38Q9H0F5 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC27.06■■□□□ 1.92
RNF38Q9H0F5 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC27.06■■□□□ 1.92
RNF38Q9H0F5 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC27.06■■□□□ 1.92
RNF38Q9H0F5 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC27.05■■□□□ 1.92
RNF38Q9H0F5 HES6-205ENST00000409356 528 ntTSL 2 BASIC27.04■■□□□ 1.92
RNF38Q9H0F5 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
RNF38Q9H0F5 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC27.04■■□□□ 1.92
RNF38Q9H0F5 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC27.03■■□□□ 1.92
RNF38Q9H0F5 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
RNF38Q9H0F5 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
RNF38Q9H0F5 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC27.02■■□□□ 1.92
RNF38Q9H0F5 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC27.01■■□□□ 1.91
RNF38Q9H0F5 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
RNF38Q9H0F5 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
RNF38Q9H0F5 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC27■■□□□ 1.91
RNF38Q9H0F5 METRNL-202ENST00000570778 967 ntTSL 5 BASIC27■■□□□ 1.91
RNF38Q9H0F5 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
RNF38Q9H0F5 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC26.99■■□□□ 1.91
RNF38Q9H0F5 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC26.99■■□□□ 1.91
RNF38Q9H0F5 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC26.99■■□□□ 1.91
RNF38Q9H0F5 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC26.98■■□□□ 1.91
RNF38Q9H0F5 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
RNF38Q9H0F5 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC26.97■■□□□ 1.91
RNF38Q9H0F5 AC135983.2-203ENST00000454486 1613 ntBASIC26.97■■□□□ 1.91
RNF38Q9H0F5 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC26.97■■□□□ 1.91
RNF38Q9H0F5 ST7-AS1-201ENST00000456775 1889 ntBASIC26.96■■□□□ 1.91
RNF38Q9H0F5 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC26.95■■□□□ 1.91
RNF38Q9H0F5 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC26.95■■□□□ 1.91
RNF38Q9H0F5 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC26.95■■□□□ 1.9
RNF38Q9H0F5 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
RNF38Q9H0F5 WHAMMP2-203ENST00000563942 1603 ntBASIC26.94■■□□□ 1.9
RNF38Q9H0F5 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC26.94■■□□□ 1.9
RNF38Q9H0F5 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC26.94■■□□□ 1.9
RNF38Q9H0F5 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
RNF38Q9H0F5 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC26.93■■□□□ 1.9
RNF38Q9H0F5 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
RNF38Q9H0F5 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC26.93■■□□□ 1.9
RNF38Q9H0F5 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
RNF38Q9H0F5 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC26.92■■□□□ 1.9
RNF38Q9H0F5 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
RNF38Q9H0F5 CHST11-202ENST00000546689 756 ntTSL 2 BASIC26.92■■□□□ 1.9
RNF38Q9H0F5 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC26.92■■□□□ 1.9
RNF38Q9H0F5 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC26.92■■□□□ 1.9
RNF38Q9H0F5 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC26.91■■□□□ 1.9
RNF38Q9H0F5 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
RNF38Q9H0F5 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
RNF38Q9H0F5 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC26.91■■□□□ 1.9
RNF38Q9H0F5 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
RNF38Q9H0F5 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
RNF38Q9H0F5 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC26.9■■□□□ 1.9
RNF38Q9H0F5 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
RNF38Q9H0F5 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC26.88■■□□□ 1.89
RNF38Q9H0F5 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC26.88■■□□□ 1.89
RNF38Q9H0F5 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
RNF38Q9H0F5 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC26.88■■□□□ 1.89
RNF38Q9H0F5 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC26.87■■□□□ 1.89
RNF38Q9H0F5 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC26.87■■□□□ 1.89
RNF38Q9H0F5 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC26.86■■□□□ 1.89
RNF38Q9H0F5 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC26.86■■□□□ 1.89
RNF38Q9H0F5 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC26.86■■□□□ 1.89
RNF38Q9H0F5 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
RNF38Q9H0F5 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC26.84■■□□□ 1.89
Retrieved 100 of 98,524 protein–RNA pairs in 16.1 ms