Protein–RNA interactions for Protein: Q9BWH6

RPAP1, RNA polymerase II-associated protein 1, humanhuman

Predicted RBP Predictions only

Length 1,393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP1Q9BWH6 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
RPAP1Q9BWH6 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
RPAP1Q9BWH6 GDI1-215ENST00000630693 786 ntTSL 4 BASIC31.72■■■□□ 2.67
RPAP1Q9BWH6 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC31.72■■■□□ 2.67
RPAP1Q9BWH6 AGPS-202ENST00000409888 815 ntTSL 4 BASIC31.71■■■□□ 2.67
RPAP1Q9BWH6 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC31.71■■■□□ 2.67
RPAP1Q9BWH6 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC31.71■■■□□ 2.67
RPAP1Q9BWH6 DUX4L11-201ENST00000611504 1267 ntBASIC31.71■■■□□ 2.67
RPAP1Q9BWH6 DUX4L12-201ENST00000614593 1267 ntBASIC31.71■■■□□ 2.67
RPAP1Q9BWH6 DUX4L14-201ENST00000621227 1267 ntBASIC31.71■■■□□ 2.67
RPAP1Q9BWH6 CR559946.2-201ENST00000623684 991 ntBASIC31.71■■■□□ 2.67
RPAP1Q9BWH6 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC31.71■■■□□ 2.67
RPAP1Q9BWH6 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
RPAP1Q9BWH6 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
RPAP1Q9BWH6 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC31.7■■■□□ 2.67
RPAP1Q9BWH6 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC31.7■■■□□ 2.67
RPAP1Q9BWH6 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.67
RPAP1Q9BWH6 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC31.7■■■□□ 2.67
RPAP1Q9BWH6 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC31.69■■■□□ 2.66
RPAP1Q9BWH6 AC016575.1-201ENST00000607026 382 ntBASIC31.69■■■□□ 2.66
RPAP1Q9BWH6 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC31.68■■■□□ 2.66
RPAP1Q9BWH6 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC31.68■■■□□ 2.66
RPAP1Q9BWH6 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
RPAP1Q9BWH6 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC31.68■■■□□ 2.66
RPAP1Q9BWH6 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC31.68■■■□□ 2.66
RPAP1Q9BWH6 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC31.68■■■□□ 2.66
RPAP1Q9BWH6 ABCB10P3-201ENST00000561950 2166 ntBASIC31.67■■■□□ 2.66
RPAP1Q9BWH6 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC31.67■■■□□ 2.66
RPAP1Q9BWH6 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
RPAP1Q9BWH6 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC31.66■■■□□ 2.66
RPAP1Q9BWH6 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC31.66■■■□□ 2.66
RPAP1Q9BWH6 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC31.66■■■□□ 2.66
RPAP1Q9BWH6 AL135925.1-201ENST00000605920 1701 ntBASIC31.65■■■□□ 2.66
RPAP1Q9BWH6 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC31.64■■■□□ 2.66
RPAP1Q9BWH6 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC31.64■■■□□ 2.66
RPAP1Q9BWH6 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC31.63■■■□□ 2.65
RPAP1Q9BWH6 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
RPAP1Q9BWH6 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
RPAP1Q9BWH6 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC31.63■■■□□ 2.65
RPAP1Q9BWH6 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
RPAP1Q9BWH6 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC31.62■■■□□ 2.65
RPAP1Q9BWH6 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC31.62■■■□□ 2.65
RPAP1Q9BWH6 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC31.62■■■□□ 2.65
RPAP1Q9BWH6 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC31.61■■■□□ 2.65
RPAP1Q9BWH6 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC31.61■■■□□ 2.65
RPAP1Q9BWH6 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
RPAP1Q9BWH6 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
RPAP1Q9BWH6 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
RPAP1Q9BWH6 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
RPAP1Q9BWH6 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
RPAP1Q9BWH6 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
RPAP1Q9BWH6 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC31.57■■■□□ 2.64
RPAP1Q9BWH6 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC31.57■■■□□ 2.64
RPAP1Q9BWH6 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC31.57■■■□□ 2.64
RPAP1Q9BWH6 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
RPAP1Q9BWH6 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
RPAP1Q9BWH6 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC31.57■■■□□ 2.64
RPAP1Q9BWH6 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC31.56■■■□□ 2.64
RPAP1Q9BWH6 CALM3-209ENST00000597743 577 ntTSL 4 BASIC31.56■■■□□ 2.64
RPAP1Q9BWH6 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
RPAP1Q9BWH6 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC31.56■■■□□ 2.64
RPAP1Q9BWH6 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC31.55■■■□□ 2.64
RPAP1Q9BWH6 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC31.55■■■□□ 2.64
RPAP1Q9BWH6 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC31.54■■■□□ 2.64
RPAP1Q9BWH6 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
RPAP1Q9BWH6 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC31.53■■■□□ 2.64
RPAP1Q9BWH6 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC31.53■■■□□ 2.64
RPAP1Q9BWH6 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC31.52■■■□□ 2.64
RPAP1Q9BWH6 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
RPAP1Q9BWH6 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC31.52■■■□□ 2.64
RPAP1Q9BWH6 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC31.51■■■□□ 2.64
RPAP1Q9BWH6 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC31.51■■■□□ 2.63
RPAP1Q9BWH6 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC31.51■■■□□ 2.63
RPAP1Q9BWH6 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC31.5■■■□□ 2.63
RPAP1Q9BWH6 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
RPAP1Q9BWH6 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
RPAP1Q9BWH6 AC010864.1-201ENST00000609407 1511 ntBASIC31.5■■■□□ 2.63
RPAP1Q9BWH6 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
RPAP1Q9BWH6 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC31.48■■■□□ 2.63
RPAP1Q9BWH6 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC31.48■■■□□ 2.63
RPAP1Q9BWH6 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC31.48■■■□□ 2.63
RPAP1Q9BWH6 EI24-212ENST00000615917 1407 ntTSL 2 BASIC31.48■■■□□ 2.63
RPAP1Q9BWH6 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
RPAP1Q9BWH6 HSD17B1P1-201ENST00000590052 955 ntBASIC31.47■■■□□ 2.63
RPAP1Q9BWH6 AC139426.1-201ENST00000568218 2529 ntBASIC31.46■■■□□ 2.63
RPAP1Q9BWH6 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC31.45■■■□□ 2.63
RPAP1Q9BWH6 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC31.45■■■□□ 2.63
RPAP1Q9BWH6 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.62
RPAP1Q9BWH6 DUX4L13-201ENST00000554103 1267 ntBASIC31.44■■■□□ 2.62
RPAP1Q9BWH6 DUX4L15-201ENST00000611059 1267 ntBASIC31.44■■■□□ 2.62
RPAP1Q9BWH6 DUX4L23-201ENST00000615195 1269 ntBASIC31.44■■■□□ 2.62
RPAP1Q9BWH6 DUX4L24-201ENST00000617576 1269 ntBASIC31.44■■■□□ 2.62
RPAP1Q9BWH6 DUX4L22-201ENST00000618238 1269 ntBASIC31.44■■■□□ 2.62
RPAP1Q9BWH6 DUX4L20-201ENST00000619712 1269 ntBASIC31.44■■■□□ 2.62
RPAP1Q9BWH6 DUX4L21-201ENST00000622058 1269 ntBASIC31.44■■■□□ 2.62
RPAP1Q9BWH6 DUX4L10-201ENST00000622460 1267 ntBASIC31.44■■■□□ 2.62
RPAP1Q9BWH6 DUX4L25-201ENST00000624915 1269 ntBASIC31.44■■■□□ 2.62
RPAP1Q9BWH6 SHF-206ENST00000560471 2499 ntTSL 5 BASIC31.44■■■□□ 2.62
RPAP1Q9BWH6 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
RPAP1Q9BWH6 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
Retrieved 100 of 98,524 protein–RNA pairs in 17.8 ms