Protein–RNA interactions for Protein: Q9BT76

UPK3B, Uroplakin-3b, humanhuman

Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK3BQ9BT76 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
UPK3BQ9BT76 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC17.89■□□□□ 0.45
UPK3BQ9BT76 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
UPK3BQ9BT76 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC17.89■□□□□ 0.45
UPK3BQ9BT76 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC17.88■□□□□ 0.45
UPK3BQ9BT76 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC17.88■□□□□ 0.45
UPK3BQ9BT76 MACF1-219ENST00000484793 834 ntTSL 2 BASIC17.88■□□□□ 0.45
UPK3BQ9BT76 AL135925.1-201ENST00000605920 1701 ntBASIC17.88■□□□□ 0.45
UPK3BQ9BT76 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
UPK3BQ9BT76 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
UPK3BQ9BT76 AGPS-202ENST00000409888 815 ntTSL 4 BASIC17.86■□□□□ 0.45
UPK3BQ9BT76 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
UPK3BQ9BT76 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
UPK3BQ9BT76 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
UPK3BQ9BT76 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
UPK3BQ9BT76 CALM3-209ENST00000597743 577 ntTSL 4 BASIC17.85■□□□□ 0.45
UPK3BQ9BT76 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
UPK3BQ9BT76 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
UPK3BQ9BT76 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC17.84■□□□□ 0.45
UPK3BQ9BT76 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
UPK3BQ9BT76 DUX4L11-201ENST00000611504 1267 ntBASIC17.83■□□□□ 0.44
UPK3BQ9BT76 DUX4L12-201ENST00000614593 1267 ntBASIC17.83■□□□□ 0.44
UPK3BQ9BT76 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC17.83■□□□□ 0.44
UPK3BQ9BT76 DUX4L14-201ENST00000621227 1267 ntBASIC17.83■□□□□ 0.44
UPK3BQ9BT76 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
UPK3BQ9BT76 LINC00273-201ENST00000539813 1452 ntBASIC17.82■□□□□ 0.44
UPK3BQ9BT76 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
UPK3BQ9BT76 RNF166-209ENST00000567844 633 ntTSL 5 BASIC17.82■□□□□ 0.44
UPK3BQ9BT76 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC17.82■□□□□ 0.44
UPK3BQ9BT76 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC17.82■□□□□ 0.44
UPK3BQ9BT76 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC17.82■□□□□ 0.44
UPK3BQ9BT76 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC17.81■□□□□ 0.44
UPK3BQ9BT76 HLA-V-202ENST00000446817 847 ntBASIC17.81■□□□□ 0.44
UPK3BQ9BT76 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC17.81■□□□□ 0.44
UPK3BQ9BT76 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
UPK3BQ9BT76 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
UPK3BQ9BT76 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
UPK3BQ9BT76 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC17.8■□□□□ 0.44
UPK3BQ9BT76 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
UPK3BQ9BT76 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC17.8■□□□□ 0.44
UPK3BQ9BT76 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
UPK3BQ9BT76 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
UPK3BQ9BT76 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
UPK3BQ9BT76 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
UPK3BQ9BT76 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
UPK3BQ9BT76 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
UPK3BQ9BT76 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
UPK3BQ9BT76 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC17.78■□□□□ 0.44
UPK3BQ9BT76 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
UPK3BQ9BT76 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
UPK3BQ9BT76 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC17.78■□□□□ 0.44
UPK3BQ9BT76 MBP-237ENST00000579129 1052 ntTSL 5 BASIC17.78■□□□□ 0.44
UPK3BQ9BT76 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC17.78■□□□□ 0.44
UPK3BQ9BT76 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC17.78■□□□□ 0.44
UPK3BQ9BT76 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
UPK3BQ9BT76 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC17.77■□□□□ 0.44
UPK3BQ9BT76 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.44
UPK3BQ9BT76 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
UPK3BQ9BT76 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC17.77■□□□□ 0.44
UPK3BQ9BT76 MIR3648-2-201ENST00000581792 180 ntBASIC17.77■□□□□ 0.44
UPK3BQ9BT76 MIR3648-1-201ENST00000615959 180 ntBASIC17.77■□□□□ 0.44
UPK3BQ9BT76 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
UPK3BQ9BT76 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
UPK3BQ9BT76 DUX4L13-201ENST00000554103 1267 ntBASIC17.76■□□□□ 0.43
UPK3BQ9BT76 DUX4L15-201ENST00000611059 1267 ntBASIC17.76■□□□□ 0.43
UPK3BQ9BT76 DUX4L23-201ENST00000615195 1269 ntBASIC17.76■□□□□ 0.43
UPK3BQ9BT76 DUX4L24-201ENST00000617576 1269 ntBASIC17.76■□□□□ 0.43
UPK3BQ9BT76 DUX4L22-201ENST00000618238 1269 ntBASIC17.76■□□□□ 0.43
UPK3BQ9BT76 DUX4L20-201ENST00000619712 1269 ntBASIC17.76■□□□□ 0.43
UPK3BQ9BT76 DUX4L21-201ENST00000622058 1269 ntBASIC17.76■□□□□ 0.43
UPK3BQ9BT76 DUX4L10-201ENST00000622460 1267 ntBASIC17.76■□□□□ 0.43
UPK3BQ9BT76 DUX4L25-201ENST00000624915 1269 ntBASIC17.76■□□□□ 0.43
UPK3BQ9BT76 GDI1-215ENST00000630693 786 ntTSL 4 BASIC17.76■□□□□ 0.43
UPK3BQ9BT76 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
UPK3BQ9BT76 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
UPK3BQ9BT76 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
UPK3BQ9BT76 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
UPK3BQ9BT76 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
UPK3BQ9BT76 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
UPK3BQ9BT76 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC17.75■□□□□ 0.43
UPK3BQ9BT76 AC127502.1-201ENST00000399971 1502 ntBASIC17.75■□□□□ 0.43
UPK3BQ9BT76 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
UPK3BQ9BT76 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
UPK3BQ9BT76 MIR639-201ENST00000384974 98 ntBASIC17.74■□□□□ 0.43
UPK3BQ9BT76 CR559946.2-201ENST00000623684 991 ntBASIC17.74■□□□□ 0.43
UPK3BQ9BT76 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
UPK3BQ9BT76 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
UPK3BQ9BT76 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
UPK3BQ9BT76 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
UPK3BQ9BT76 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC17.73■□□□□ 0.43
UPK3BQ9BT76 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC17.73■□□□□ 0.43
UPK3BQ9BT76 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC17.73■□□□□ 0.43
UPK3BQ9BT76 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
UPK3BQ9BT76 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
UPK3BQ9BT76 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
UPK3BQ9BT76 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC17.71■□□□□ 0.43
UPK3BQ9BT76 AC016575.1-201ENST00000607026 382 ntBASIC17.71■□□□□ 0.43
UPK3BQ9BT76 CHML-204ENST00000638121 920 ntTSL 2 BASIC17.71■□□□□ 0.43
UPK3BQ9BT76 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
UPK3BQ9BT76 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 57.5 ms