Protein–RNA interactions for Protein: Q8TBC3

SHKBP1, SH3KBP1-binding protein 1, humanhuman

Predictions only

Length 707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1Q8TBC3 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
SHKBP1Q8TBC3 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC27.44■■□□□ 1.98
SHKBP1Q8TBC3 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
SHKBP1Q8TBC3 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC27.43■■□□□ 1.98
SHKBP1Q8TBC3 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC27.42■■□□□ 1.98
SHKBP1Q8TBC3 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC27.42■■□□□ 1.98
SHKBP1Q8TBC3 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC27.42■■□□□ 1.98
SHKBP1Q8TBC3 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC27.42■■□□□ 1.98
SHKBP1Q8TBC3 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC27.42■■□□□ 1.98
SHKBP1Q8TBC3 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC27.41■■□□□ 1.98
SHKBP1Q8TBC3 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC27.41■■□□□ 1.98
SHKBP1Q8TBC3 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC27.4■■□□□ 1.98
SHKBP1Q8TBC3 AC010864.1-201ENST00000609407 1511 ntBASIC27.4■■□□□ 1.98
SHKBP1Q8TBC3 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.98
SHKBP1Q8TBC3 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC27.39■■□□□ 1.98
SHKBP1Q8TBC3 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC27.39■■□□□ 1.98
SHKBP1Q8TBC3 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC27.39■■□□□ 1.98
SHKBP1Q8TBC3 CHML-204ENST00000638121 920 ntTSL 2 BASIC27.39■■□□□ 1.98
SHKBP1Q8TBC3 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC27.39■■□□□ 1.98
SHKBP1Q8TBC3 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC27.38■■□□□ 1.97
SHKBP1Q8TBC3 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
SHKBP1Q8TBC3 HES6-205ENST00000409356 528 ntTSL 2 BASIC27.37■■□□□ 1.97
SHKBP1Q8TBC3 METRNL-202ENST00000570778 967 ntTSL 5 BASIC27.37■■□□□ 1.97
SHKBP1Q8TBC3 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC27.36■■□□□ 1.97
SHKBP1Q8TBC3 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC27.36■■□□□ 1.97
SHKBP1Q8TBC3 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC27.36■■□□□ 1.97
SHKBP1Q8TBC3 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC27.36■■□□□ 1.97
SHKBP1Q8TBC3 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC27.35■■□□□ 1.97
SHKBP1Q8TBC3 HSD17B1P1-201ENST00000590052 955 ntBASIC27.35■■□□□ 1.97
SHKBP1Q8TBC3 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
SHKBP1Q8TBC3 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
SHKBP1Q8TBC3 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC27.34■■□□□ 1.97
SHKBP1Q8TBC3 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC27.34■■□□□ 1.97
SHKBP1Q8TBC3 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC27.33■■□□□ 1.97
SHKBP1Q8TBC3 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC27.33■■□□□ 1.97
SHKBP1Q8TBC3 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC27.33■■□□□ 1.97
SHKBP1Q8TBC3 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
SHKBP1Q8TBC3 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC27.32■■□□□ 1.96
SHKBP1Q8TBC3 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
SHKBP1Q8TBC3 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
SHKBP1Q8TBC3 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
SHKBP1Q8TBC3 LINC00273-201ENST00000539813 1452 ntBASIC27.31■■□□□ 1.96
SHKBP1Q8TBC3 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC27.31■■□□□ 1.96
SHKBP1Q8TBC3 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
SHKBP1Q8TBC3 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC27.3■■□□□ 1.96
SHKBP1Q8TBC3 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC27.3■■□□□ 1.96
SHKBP1Q8TBC3 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC27.3■■□□□ 1.96
SHKBP1Q8TBC3 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC27.29■■□□□ 1.96
SHKBP1Q8TBC3 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
SHKBP1Q8TBC3 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
SHKBP1Q8TBC3 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC27.27■■□□□ 1.96
SHKBP1Q8TBC3 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC27.26■■□□□ 1.95
SHKBP1Q8TBC3 ABHD17AP3-201ENST00000503096 1137 ntBASIC27.26■■□□□ 1.95
SHKBP1Q8TBC3 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC27.25■■□□□ 1.95
SHKBP1Q8TBC3 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC27.25■■□□□ 1.95
SHKBP1Q8TBC3 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
SHKBP1Q8TBC3 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC27.23■■□□□ 1.95
SHKBP1Q8TBC3 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
SHKBP1Q8TBC3 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC27.22■■□□□ 1.95
SHKBP1Q8TBC3 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
SHKBP1Q8TBC3 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC27.21■■□□□ 1.95
SHKBP1Q8TBC3 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC27.21■■□□□ 1.95
SHKBP1Q8TBC3 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC27.21■■□□□ 1.95
SHKBP1Q8TBC3 BRD4-212ENST00000630599 726 ntTSL 2 BASIC27.21■■□□□ 1.95
SHKBP1Q8TBC3 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
SHKBP1Q8TBC3 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
SHKBP1Q8TBC3 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC27.2■■□□□ 1.94
SHKBP1Q8TBC3 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC27.2■■□□□ 1.94
SHKBP1Q8TBC3 CHST11-202ENST00000546689 756 ntTSL 2 BASIC27.2■■□□□ 1.94
SHKBP1Q8TBC3 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC27.2■■□□□ 1.94
SHKBP1Q8TBC3 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
SHKBP1Q8TBC3 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
SHKBP1Q8TBC3 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
SHKBP1Q8TBC3 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC27.18■■□□□ 1.94
SHKBP1Q8TBC3 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC27.18■■□□□ 1.94
SHKBP1Q8TBC3 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC27.17■■□□□ 1.94
SHKBP1Q8TBC3 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC27.17■■□□□ 1.94
SHKBP1Q8TBC3 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
SHKBP1Q8TBC3 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC27.17■■□□□ 1.94
SHKBP1Q8TBC3 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
SHKBP1Q8TBC3 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
SHKBP1Q8TBC3 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC27.16■■□□□ 1.94
SHKBP1Q8TBC3 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC27.16■■□□□ 1.94
SHKBP1Q8TBC3 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC27.16■■□□□ 1.94
SHKBP1Q8TBC3 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC27.16■■□□□ 1.94
SHKBP1Q8TBC3 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC27.14■■□□□ 1.94
SHKBP1Q8TBC3 AC127502.1-201ENST00000399971 1502 ntBASIC27.14■■□□□ 1.94
SHKBP1Q8TBC3 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
SHKBP1Q8TBC3 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC27.13■■□□□ 1.93
SHKBP1Q8TBC3 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC27.12■■□□□ 1.93
SHKBP1Q8TBC3 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
SHKBP1Q8TBC3 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
SHKBP1Q8TBC3 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
SHKBP1Q8TBC3 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC27.12■■□□□ 1.93
SHKBP1Q8TBC3 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC27.12■■□□□ 1.93
SHKBP1Q8TBC3 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
SHKBP1Q8TBC3 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
SHKBP1Q8TBC3 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC27.12■■□□□ 1.93
SHKBP1Q8TBC3 SRP68-213ENST00000629930 165 ntTSL 5 BASIC27.12■■□□□ 1.93
SHKBP1Q8TBC3 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC27.12■■□□□ 1.93
Retrieved 100 of 98,524 protein–RNA pairs in 82.5 ms