Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
CLHC1Q8NHS4 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
CLHC1Q8NHS4 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
CLHC1Q8NHS4 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
CLHC1Q8NHS4 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC24.8■■□□□ 1.56
CLHC1Q8NHS4 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC24.8■■□□□ 1.56
CLHC1Q8NHS4 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC24.8■■□□□ 1.56
CLHC1Q8NHS4 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC24.8■■□□□ 1.56
CLHC1Q8NHS4 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC24.8■■□□□ 1.56
CLHC1Q8NHS4 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC24.79■■□□□ 1.56
CLHC1Q8NHS4 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
CLHC1Q8NHS4 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
CLHC1Q8NHS4 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC24.79■■□□□ 1.56
CLHC1Q8NHS4 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC24.78■■□□□ 1.56
CLHC1Q8NHS4 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC24.77■■□□□ 1.56
CLHC1Q8NHS4 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC24.77■■□□□ 1.56
CLHC1Q8NHS4 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
CLHC1Q8NHS4 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC24.75■■□□□ 1.55
CLHC1Q8NHS4 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
CLHC1Q8NHS4 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC24.75■■□□□ 1.55
CLHC1Q8NHS4 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC24.75■■□□□ 1.55
CLHC1Q8NHS4 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC24.75■■□□□ 1.55
CLHC1Q8NHS4 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
CLHC1Q8NHS4 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC24.74■■□□□ 1.55
CLHC1Q8NHS4 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC24.72■■□□□ 1.55
CLHC1Q8NHS4 AC127502.1-201ENST00000399971 1502 ntBASIC24.72■■□□□ 1.55
CLHC1Q8NHS4 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC24.72■■□□□ 1.55
CLHC1Q8NHS4 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
CLHC1Q8NHS4 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
CLHC1Q8NHS4 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
CLHC1Q8NHS4 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC24.71■■□□□ 1.55
CLHC1Q8NHS4 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC24.71■■□□□ 1.55
CLHC1Q8NHS4 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC24.71■■□□□ 1.55
CLHC1Q8NHS4 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
CLHC1Q8NHS4 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC24.7■■□□□ 1.55
CLHC1Q8NHS4 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC24.7■■□□□ 1.54
CLHC1Q8NHS4 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC24.7■■□□□ 1.54
CLHC1Q8NHS4 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
CLHC1Q8NHS4 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC24.69■■□□□ 1.54
CLHC1Q8NHS4 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC24.69■■□□□ 1.54
CLHC1Q8NHS4 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC24.69■■□□□ 1.54
CLHC1Q8NHS4 MIR762-201ENST00000390236 83 ntBASIC24.69■■□□□ 1.54
CLHC1Q8NHS4 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
CLHC1Q8NHS4 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
CLHC1Q8NHS4 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
CLHC1Q8NHS4 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC24.68■■□□□ 1.54
CLHC1Q8NHS4 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
CLHC1Q8NHS4 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC24.67■■□□□ 1.54
CLHC1Q8NHS4 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC24.67■■□□□ 1.54
CLHC1Q8NHS4 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC24.67■■□□□ 1.54
CLHC1Q8NHS4 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC24.67■■□□□ 1.54
CLHC1Q8NHS4 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
CLHC1Q8NHS4 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC24.66■■□□□ 1.54
CLHC1Q8NHS4 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC24.65■■□□□ 1.54
CLHC1Q8NHS4 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC24.65■■□□□ 1.54
CLHC1Q8NHS4 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC24.65■■□□□ 1.54
CLHC1Q8NHS4 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC24.65■■□□□ 1.54
CLHC1Q8NHS4 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
CLHC1Q8NHS4 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC24.64■■□□□ 1.54
CLHC1Q8NHS4 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC24.64■■□□□ 1.54
CLHC1Q8NHS4 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
CLHC1Q8NHS4 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC24.64■■□□□ 1.53
CLHC1Q8NHS4 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
CLHC1Q8NHS4 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
CLHC1Q8NHS4 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC24.63■■□□□ 1.53
CLHC1Q8NHS4 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
CLHC1Q8NHS4 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
CLHC1Q8NHS4 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC24.61■■□□□ 1.53
CLHC1Q8NHS4 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC24.61■■□□□ 1.53
CLHC1Q8NHS4 SUZ12P1-203ENST00000578195 985 ntBASIC24.61■■□□□ 1.53
CLHC1Q8NHS4 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
CLHC1Q8NHS4 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC24.61■■□□□ 1.53
CLHC1Q8NHS4 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
CLHC1Q8NHS4 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC24.61■■□□□ 1.53
CLHC1Q8NHS4 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
CLHC1Q8NHS4 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
CLHC1Q8NHS4 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC24.6■■□□□ 1.53
CLHC1Q8NHS4 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC24.6■■□□□ 1.53
CLHC1Q8NHS4 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
CLHC1Q8NHS4 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC24.59■■□□□ 1.53
CLHC1Q8NHS4 CHML-205ENST00000638160 705 ntTSL 3 BASIC24.59■■□□□ 1.53
CLHC1Q8NHS4 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC24.59■■□□□ 1.53
CLHC1Q8NHS4 AP004833.2-201ENST00000532228 1454 ntBASIC24.58■■□□□ 1.53
CLHC1Q8NHS4 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC24.58■■□□□ 1.53
CLHC1Q8NHS4 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC24.58■■□□□ 1.53
CLHC1Q8NHS4 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC24.58■■□□□ 1.53
CLHC1Q8NHS4 RPS2-209ENST00000529806 993 ntTSL 3 BASIC24.57■■□□□ 1.52
CLHC1Q8NHS4 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC24.56■■□□□ 1.52
CLHC1Q8NHS4 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC24.56■■□□□ 1.52
CLHC1Q8NHS4 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
CLHC1Q8NHS4 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC24.56■■□□□ 1.52
CLHC1Q8NHS4 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
CLHC1Q8NHS4 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC24.56■■□□□ 1.52
CLHC1Q8NHS4 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC24.55■■□□□ 1.52
CLHC1Q8NHS4 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC24.55■■□□□ 1.52
CLHC1Q8NHS4 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
CLHC1Q8NHS4 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
CLHC1Q8NHS4 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
CLHC1Q8NHS4 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
CLHC1Q8NHS4 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC24.53■■□□□ 1.52
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms