Protein–RNA interactions for Protein: Q6A162

KRT40, Keratin, type I cytoskeletal 40, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40Q6A162 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC30.16■■■□□ 2.42
KRT40Q6A162 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
KRT40Q6A162 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
KRT40Q6A162 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC30.14■■■□□ 2.42
KRT40Q6A162 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC30.14■■■□□ 2.42
KRT40Q6A162 DUX4L28-201ENST00000623687 678 ntBASIC30.14■■■□□ 2.42
KRT40Q6A162 RPS2-209ENST00000529806 993 ntTSL 3 BASIC30.13■■■□□ 2.41
KRT40Q6A162 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC30.13■■■□□ 2.41
KRT40Q6A162 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC30.13■■■□□ 2.41
KRT40Q6A162 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC30.13■■■□□ 2.41
KRT40Q6A162 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC30.13■■■□□ 2.41
KRT40Q6A162 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC30.12■■■□□ 2.41
KRT40Q6A162 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
KRT40Q6A162 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC30.12■■■□□ 2.41
KRT40Q6A162 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC30.12■■■□□ 2.41
KRT40Q6A162 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC30.11■■■□□ 2.41
KRT40Q6A162 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC30.11■■■□□ 2.41
KRT40Q6A162 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
KRT40Q6A162 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC30.11■■■□□ 2.41
KRT40Q6A162 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC30.09■■■□□ 2.41
KRT40Q6A162 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC30.09■■■□□ 2.41
KRT40Q6A162 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC30.08■■■□□ 2.41
KRT40Q6A162 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC30.07■■■□□ 2.4
KRT40Q6A162 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC30.07■■■□□ 2.4
KRT40Q6A162 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC30.06■■■□□ 2.4
KRT40Q6A162 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
KRT40Q6A162 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
KRT40Q6A162 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC30.04■■■□□ 2.4
KRT40Q6A162 AC127502.1-201ENST00000399971 1502 ntBASIC30.03■■■□□ 2.4
KRT40Q6A162 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC30.03■■■□□ 2.4
KRT40Q6A162 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC30.03■■■□□ 2.4
KRT40Q6A162 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC30.03■■■□□ 2.4
KRT40Q6A162 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC30.03■■■□□ 2.4
KRT40Q6A162 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
KRT40Q6A162 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC30.03■■■□□ 2.4
KRT40Q6A162 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC30.02■■■□□ 2.4
KRT40Q6A162 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC30.01■■■□□ 2.39
KRT40Q6A162 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
KRT40Q6A162 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
KRT40Q6A162 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC30■■■□□ 2.39
KRT40Q6A162 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC30■■■□□ 2.39
KRT40Q6A162 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC30■■■□□ 2.39
KRT40Q6A162 AC044849.2-201ENST00000606596 710 ntBASIC29.98■■■□□ 2.39
KRT40Q6A162 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
KRT40Q6A162 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC29.97■■■□□ 2.39
KRT40Q6A162 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC29.97■■■□□ 2.39
KRT40Q6A162 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC29.97■■■□□ 2.39
KRT40Q6A162 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC29.97■■■□□ 2.39
KRT40Q6A162 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC29.97■■■□□ 2.39
KRT40Q6A162 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC29.96■■■□□ 2.39
KRT40Q6A162 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC29.96■■■□□ 2.39
KRT40Q6A162 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC29.96■■■□□ 2.39
KRT40Q6A162 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC29.96■■■□□ 2.39
KRT40Q6A162 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC29.95■■■□□ 2.39
KRT40Q6A162 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC29.95■■■□□ 2.38
KRT40Q6A162 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC29.94■■■□□ 2.38
KRT40Q6A162 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC29.94■■■□□ 2.38
KRT40Q6A162 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC29.93■■■□□ 2.38
KRT40Q6A162 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC29.93■■■□□ 2.38
KRT40Q6A162 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC29.93■■■□□ 2.38
KRT40Q6A162 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC29.93■■■□□ 2.38
KRT40Q6A162 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC29.92■■■□□ 2.38
KRT40Q6A162 MIR6090-201ENST00000622481 60 ntBASIC29.91■■■□□ 2.38
KRT40Q6A162 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC29.91■■■□□ 2.38
KRT40Q6A162 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC29.91■■■□□ 2.38
KRT40Q6A162 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC29.9■■■□□ 2.38
KRT40Q6A162 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC29.89■■■□□ 2.38
KRT40Q6A162 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC29.89■■■□□ 2.38
KRT40Q6A162 ZNRF2P2-203ENST00000454624 420 ntBASIC29.89■■■□□ 2.38
KRT40Q6A162 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC29.89■■■□□ 2.38
KRT40Q6A162 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC29.89■■■□□ 2.38
KRT40Q6A162 AC108673.1-201ENST00000510422 1159 ntBASIC29.88■■■□□ 2.37
KRT40Q6A162 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC29.87■■■□□ 2.37
KRT40Q6A162 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC29.87■■■□□ 2.37
KRT40Q6A162 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC29.87■■■□□ 2.37
KRT40Q6A162 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC29.86■■■□□ 2.37
KRT40Q6A162 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC29.86■■■□□ 2.37
KRT40Q6A162 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC29.86■■■□□ 2.37
KRT40Q6A162 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC29.86■■■□□ 2.37
KRT40Q6A162 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC29.85■■■□□ 2.37
KRT40Q6A162 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC29.85■■■□□ 2.37
KRT40Q6A162 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC29.85■■■□□ 2.37
KRT40Q6A162 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC29.85■■■□□ 2.37
KRT40Q6A162 AP004833.2-201ENST00000532228 1454 ntBASIC29.85■■■□□ 2.37
KRT40Q6A162 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC29.84■■■□□ 2.37
KRT40Q6A162 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC29.83■■■□□ 2.37
KRT40Q6A162 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC29.82■■■□□ 2.36
KRT40Q6A162 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC29.82■■■□□ 2.36
KRT40Q6A162 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC29.8■■■□□ 2.36
KRT40Q6A162 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC29.8■■■□□ 2.36
KRT40Q6A162 DRD5P2-201ENST00000421395 2012 ntBASIC29.8■■■□□ 2.36
KRT40Q6A162 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC29.8■■■□□ 2.36
KRT40Q6A162 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC29.8■■■□□ 2.36
KRT40Q6A162 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
KRT40Q6A162 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC29.8■■■□□ 2.36
KRT40Q6A162 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
KRT40Q6A162 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC29.79■■■□□ 2.36
KRT40Q6A162 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC29.79■■■□□ 2.36
KRT40Q6A162 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC29.78■■■□□ 2.36
KRT40Q6A162 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC29.77■■■□□ 2.36
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms