Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 AC108673.1-201ENST00000510422 1159 ntBASIC31.36■■■□□ 2.61
VPS53Q5VIR6 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC31.36■■■□□ 2.61
VPS53Q5VIR6 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC31.35■■■□□ 2.61
VPS53Q5VIR6 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
VPS53Q5VIR6 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
VPS53Q5VIR6 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
VPS53Q5VIR6 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC31.33■■■□□ 2.61
VPS53Q5VIR6 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC31.33■■■□□ 2.61
VPS53Q5VIR6 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
VPS53Q5VIR6 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
VPS53Q5VIR6 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC31.29■■■□□ 2.6
VPS53Q5VIR6 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC31.29■■■□□ 2.6
VPS53Q5VIR6 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC31.29■■■□□ 2.6
VPS53Q5VIR6 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC31.28■■■□□ 2.6
VPS53Q5VIR6 BOD1-206ENST00000480951 814 ntTSL 2 BASIC31.28■■■□□ 2.6
VPS53Q5VIR6 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
VPS53Q5VIR6 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC31.27■■■□□ 2.6
VPS53Q5VIR6 SHF-206ENST00000560471 2499 ntTSL 5 BASIC31.26■■■□□ 2.6
VPS53Q5VIR6 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.6
VPS53Q5VIR6 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC31.26■■■□□ 2.6
VPS53Q5VIR6 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC31.26■■■□□ 2.6
VPS53Q5VIR6 AC127502.1-201ENST00000399971 1502 ntBASIC31.26■■■□□ 2.59
VPS53Q5VIR6 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.59
VPS53Q5VIR6 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.59
VPS53Q5VIR6 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
VPS53Q5VIR6 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
VPS53Q5VIR6 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC31.25■■■□□ 2.59
VPS53Q5VIR6 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
VPS53Q5VIR6 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC31.24■■■□□ 2.59
VPS53Q5VIR6 CIB2-204ENST00000557846 934 ntTSL 3 BASIC31.23■■■□□ 2.59
VPS53Q5VIR6 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
VPS53Q5VIR6 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC31.22■■■□□ 2.59
VPS53Q5VIR6 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
VPS53Q5VIR6 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC31.21■■■□□ 2.59
VPS53Q5VIR6 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC31.2■■■□□ 2.58
VPS53Q5VIR6 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC31.19■■■□□ 2.58
VPS53Q5VIR6 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC31.18■■■□□ 2.58
VPS53Q5VIR6 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
VPS53Q5VIR6 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC31.18■■■□□ 2.58
VPS53Q5VIR6 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC31.17■■■□□ 2.58
VPS53Q5VIR6 AC021231.2-201ENST00000594613 730 ntBASIC31.17■■■□□ 2.58
VPS53Q5VIR6 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC31.17■■■□□ 2.58
VPS53Q5VIR6 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
VPS53Q5VIR6 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC31.16■■■□□ 2.58
VPS53Q5VIR6 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
VPS53Q5VIR6 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC31.16■■■□□ 2.58
VPS53Q5VIR6 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC31.16■■■□□ 2.58
VPS53Q5VIR6 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
VPS53Q5VIR6 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC31.15■■■□□ 2.58
VPS53Q5VIR6 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC31.15■■■□□ 2.58
VPS53Q5VIR6 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC31.15■■■□□ 2.58
VPS53Q5VIR6 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC31.13■■■□□ 2.57
VPS53Q5VIR6 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC31.13■■■□□ 2.57
VPS53Q5VIR6 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
VPS53Q5VIR6 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
VPS53Q5VIR6 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC31.12■■■□□ 2.57
VPS53Q5VIR6 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC31.11■■■□□ 2.57
VPS53Q5VIR6 HGH1-207ENST00000628266 258 ntTSL 5 BASIC31.11■■■□□ 2.57
VPS53Q5VIR6 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
VPS53Q5VIR6 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC31.1■■■□□ 2.57
VPS53Q5VIR6 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC31.1■■■□□ 2.57
VPS53Q5VIR6 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
VPS53Q5VIR6 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC31.09■■■□□ 2.57
VPS53Q5VIR6 AL139393.2-201ENST00000608721 2025 ntBASIC31.09■■■□□ 2.57
VPS53Q5VIR6 DUX4L29-201ENST00000425409 679 ntBASIC31.09■■■□□ 2.57
VPS53Q5VIR6 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC31.09■■■□□ 2.57
VPS53Q5VIR6 EI24-212ENST00000615917 1407 ntTSL 2 BASIC31.08■■■□□ 2.57
VPS53Q5VIR6 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
VPS53Q5VIR6 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
VPS53Q5VIR6 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC31.07■■■□□ 2.56
VPS53Q5VIR6 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC31.07■■■□□ 2.56
VPS53Q5VIR6 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC31.06■■■□□ 2.56
VPS53Q5VIR6 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
VPS53Q5VIR6 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC31.06■■■□□ 2.56
VPS53Q5VIR6 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC31.06■■■□□ 2.56
VPS53Q5VIR6 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC31.06■■■□□ 2.56
VPS53Q5VIR6 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC31.06■■■□□ 2.56
VPS53Q5VIR6 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
VPS53Q5VIR6 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
VPS53Q5VIR6 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
VPS53Q5VIR6 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC31.05■■■□□ 2.56
VPS53Q5VIR6 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC31.04■■■□□ 2.56
VPS53Q5VIR6 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
VPS53Q5VIR6 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC31.04■■■□□ 2.56
VPS53Q5VIR6 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC31.02■■■□□ 2.56
VPS53Q5VIR6 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC31.02■■■□□ 2.56
VPS53Q5VIR6 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC31.02■■■□□ 2.56
VPS53Q5VIR6 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC31.01■■■□□ 2.56
VPS53Q5VIR6 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC31.01■■■□□ 2.55
VPS53Q5VIR6 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.55
VPS53Q5VIR6 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC31.01■■■□□ 2.55
VPS53Q5VIR6 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC31.01■■■□□ 2.55
VPS53Q5VIR6 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
VPS53Q5VIR6 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
VPS53Q5VIR6 MLEC-202ENST00000412616 841 ntTSL 3 BASIC31■■■□□ 2.55
VPS53Q5VIR6 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC31■■■□□ 2.55
VPS53Q5VIR6 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC31■■■□□ 2.55
VPS53Q5VIR6 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
VPS53Q5VIR6 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
VPS53Q5VIR6 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms