Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 MLEC-202ENST00000412616 841 ntTSL 3 BASIC25.39■■□□□ 1.66
PTCHD3Q3KNS1 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC25.38■■□□□ 1.65
PTCHD3Q3KNS1 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC25.38■■□□□ 1.65
PTCHD3Q3KNS1 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
PTCHD3Q3KNS1 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
PTCHD3Q3KNS1 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC25.38■■□□□ 1.65
PTCHD3Q3KNS1 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
PTCHD3Q3KNS1 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
PTCHD3Q3KNS1 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
PTCHD3Q3KNS1 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC25.37■■□□□ 1.65
PTCHD3Q3KNS1 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
PTCHD3Q3KNS1 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC25.37■■□□□ 1.65
PTCHD3Q3KNS1 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC25.37■■□□□ 1.65
PTCHD3Q3KNS1 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC25.36■■□□□ 1.65
PTCHD3Q3KNS1 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC25.36■■□□□ 1.65
PTCHD3Q3KNS1 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
PTCHD3Q3KNS1 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC25.35■■□□□ 1.65
PTCHD3Q3KNS1 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC25.35■■□□□ 1.65
PTCHD3Q3KNS1 AL139393.2-201ENST00000608721 2025 ntBASIC25.35■■□□□ 1.65
PTCHD3Q3KNS1 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
PTCHD3Q3KNS1 SHF-206ENST00000560471 2499 ntTSL 5 BASIC25.34■■□□□ 1.65
PTCHD3Q3KNS1 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC25.33■■□□□ 1.65
PTCHD3Q3KNS1 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC25.32■■□□□ 1.64
PTCHD3Q3KNS1 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC25.32■■□□□ 1.64
PTCHD3Q3KNS1 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
PTCHD3Q3KNS1 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC25.32■■□□□ 1.64
PTCHD3Q3KNS1 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC25.32■■□□□ 1.64
PTCHD3Q3KNS1 MIR7108-201ENST00000614319 87 ntBASIC25.32■■□□□ 1.64
PTCHD3Q3KNS1 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC25.32■■□□□ 1.64
PTCHD3Q3KNS1 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC25.32■■□□□ 1.64
PTCHD3Q3KNS1 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC25.31■■□□□ 1.64
PTCHD3Q3KNS1 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC25.31■■□□□ 1.64
PTCHD3Q3KNS1 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC25.31■■□□□ 1.64
PTCHD3Q3KNS1 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC25.31■■□□□ 1.64
PTCHD3Q3KNS1 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
PTCHD3Q3KNS1 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC25.3■■□□□ 1.64
PTCHD3Q3KNS1 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
PTCHD3Q3KNS1 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
PTCHD3Q3KNS1 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
PTCHD3Q3KNS1 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC25.28■■□□□ 1.64
PTCHD3Q3KNS1 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
PTCHD3Q3KNS1 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC25.27■■□□□ 1.64
PTCHD3Q3KNS1 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC25.27■■□□□ 1.64
PTCHD3Q3KNS1 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC25.26■■□□□ 1.63
PTCHD3Q3KNS1 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
PTCHD3Q3KNS1 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC25.26■■□□□ 1.63
PTCHD3Q3KNS1 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
PTCHD3Q3KNS1 AC127502.1-201ENST00000399971 1502 ntBASIC25.25■■□□□ 1.63
PTCHD3Q3KNS1 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC25.25■■□□□ 1.63
PTCHD3Q3KNS1 PVT1-219ENST00000523427 938 ntTSL 3 BASIC25.24■■□□□ 1.63
PTCHD3Q3KNS1 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC25.23■■□□□ 1.63
PTCHD3Q3KNS1 HGH1-207ENST00000628266 258 ntTSL 5 BASIC25.23■■□□□ 1.63
PTCHD3Q3KNS1 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
PTCHD3Q3KNS1 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
PTCHD3Q3KNS1 ZNRF2P2-203ENST00000454624 420 ntBASIC25.21■■□□□ 1.63
PTCHD3Q3KNS1 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC25.21■■□□□ 1.63
PTCHD3Q3KNS1 MIR6090-201ENST00000622481 60 ntBASIC25.21■■□□□ 1.63
PTCHD3Q3KNS1 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC25.2■■□□□ 1.62
PTCHD3Q3KNS1 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC25.2■■□□□ 1.62
PTCHD3Q3KNS1 DUX4L29-201ENST00000425409 679 ntBASIC25.2■■□□□ 1.62
PTCHD3Q3KNS1 CIB2-204ENST00000557846 934 ntTSL 3 BASIC25.2■■□□□ 1.62
PTCHD3Q3KNS1 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
PTCHD3Q3KNS1 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
PTCHD3Q3KNS1 AC108673.1-201ENST00000510422 1159 ntBASIC25.19■■□□□ 1.62
PTCHD3Q3KNS1 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC25.19■■□□□ 1.62
PTCHD3Q3KNS1 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
PTCHD3Q3KNS1 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC25.19■■□□□ 1.62
PTCHD3Q3KNS1 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
PTCHD3Q3KNS1 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC25.18■■□□□ 1.62
PTCHD3Q3KNS1 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
PTCHD3Q3KNS1 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
PTCHD3Q3KNS1 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC25.16■■□□□ 1.62
PTCHD3Q3KNS1 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC25.16■■□□□ 1.62
PTCHD3Q3KNS1 AC021231.2-201ENST00000594613 730 ntBASIC25.15■■□□□ 1.62
PTCHD3Q3KNS1 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
PTCHD3Q3KNS1 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC25.15■■□□□ 1.62
PTCHD3Q3KNS1 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC25.15■■□□□ 1.62
PTCHD3Q3KNS1 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC25.15■■□□□ 1.62
PTCHD3Q3KNS1 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
PTCHD3Q3KNS1 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC25.14■■□□□ 1.61
PTCHD3Q3KNS1 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
PTCHD3Q3KNS1 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
PTCHD3Q3KNS1 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
PTCHD3Q3KNS1 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC25.13■■□□□ 1.61
PTCHD3Q3KNS1 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC25.12■■□□□ 1.61
PTCHD3Q3KNS1 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
PTCHD3Q3KNS1 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC25.12■■□□□ 1.61
PTCHD3Q3KNS1 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
PTCHD3Q3KNS1 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
PTCHD3Q3KNS1 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
PTCHD3Q3KNS1 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC25.11■■□□□ 1.61
PTCHD3Q3KNS1 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC25.11■■□□□ 1.61
PTCHD3Q3KNS1 AP004833.2-201ENST00000532228 1454 ntBASIC25.1■■□□□ 1.61
PTCHD3Q3KNS1 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC25.1■■□□□ 1.61
PTCHD3Q3KNS1 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC25.1■■□□□ 1.61
PTCHD3Q3KNS1 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC25.1■■□□□ 1.61
PTCHD3Q3KNS1 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC25.09■■□□□ 1.61
PTCHD3Q3KNS1 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
PTCHD3Q3KNS1 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
PTCHD3Q3KNS1 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
Retrieved 100 of 98,524 protein–RNA pairs in 72.3 ms