Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
CLRN1P58418 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC23.13■■□□□ 1.29
CLRN1P58418 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
CLRN1P58418 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC23.13■■□□□ 1.29
CLRN1P58418 AP006261.1-201ENST00000584783 668 ntBASIC23.13■■□□□ 1.29
CLRN1P58418 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC23.13■■□□□ 1.29
CLRN1P58418 DUX4L28-201ENST00000623687 678 ntBASIC23.13■■□□□ 1.29
CLRN1P58418 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC23.13■■□□□ 1.29
CLRN1P58418 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC23.13■■□□□ 1.29
CLRN1P58418 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC23.12■■□□□ 1.29
CLRN1P58418 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
CLRN1P58418 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC23.1■■□□□ 1.29
CLRN1P58418 SHF-206ENST00000560471 2499 ntTSL 5 BASIC23.09■■□□□ 1.29
CLRN1P58418 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
CLRN1P58418 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC23.09■■□□□ 1.29
CLRN1P58418 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
CLRN1P58418 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC23.08■■□□□ 1.29
CLRN1P58418 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
CLRN1P58418 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
CLRN1P58418 AC127502.1-201ENST00000399971 1502 ntBASIC23.08■■□□□ 1.28
CLRN1P58418 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC23.07■■□□□ 1.28
CLRN1P58418 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC23.06■■□□□ 1.28
CLRN1P58418 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC23.06■■□□□ 1.28
CLRN1P58418 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CLRN1P58418 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC23.06■■□□□ 1.28
CLRN1P58418 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC23.06■■□□□ 1.28
CLRN1P58418 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC23.05■■□□□ 1.28
CLRN1P58418 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC23.05■■□□□ 1.28
CLRN1P58418 AC108673.1-201ENST00000510422 1159 ntBASIC23.05■■□□□ 1.28
CLRN1P58418 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC23.05■■□□□ 1.28
CLRN1P58418 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
CLRN1P58418 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
CLRN1P58418 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
CLRN1P58418 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
CLRN1P58418 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
CLRN1P58418 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
CLRN1P58418 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
CLRN1P58418 AL162393.1-201ENST00000437852 946 ntBASIC23.01■■□□□ 1.27
CLRN1P58418 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC23■■□□□ 1.27
CLRN1P58418 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC22.99■■□□□ 1.27
CLRN1P58418 NRG1-221ENST00000614767 762 ntTSL 5 BASIC22.99■■□□□ 1.27
CLRN1P58418 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC22.99■■□□□ 1.27
CLRN1P58418 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC22.99■■□□□ 1.27
CLRN1P58418 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC22.99■■□□□ 1.27
CLRN1P58418 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC22.99■■□□□ 1.27
CLRN1P58418 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
CLRN1P58418 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC22.98■■□□□ 1.27
CLRN1P58418 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC22.98■■□□□ 1.27
CLRN1P58418 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
CLRN1P58418 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC22.97■■□□□ 1.27
CLRN1P58418 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
CLRN1P58418 MIR6090-201ENST00000622481 60 ntBASIC22.96■■□□□ 1.27
CLRN1P58418 AC087741.3-201ENST00000624270 1347 ntBASIC22.96■■□□□ 1.27
CLRN1P58418 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC22.96■■□□□ 1.27
CLRN1P58418 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC22.96■■□□□ 1.27
CLRN1P58418 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC22.96■■□□□ 1.27
CLRN1P58418 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
CLRN1P58418 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC22.95■■□□□ 1.26
CLRN1P58418 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC22.95■■□□□ 1.26
CLRN1P58418 AP004833.2-201ENST00000532228 1454 ntBASIC22.95■■□□□ 1.26
CLRN1P58418 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
CLRN1P58418 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
CLRN1P58418 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC22.94■■□□□ 1.26
CLRN1P58418 AC044849.2-201ENST00000606596 710 ntBASIC22.93■■□□□ 1.26
CLRN1P58418 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
CLRN1P58418 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
CLRN1P58418 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC22.92■■□□□ 1.26
CLRN1P58418 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC22.92■■□□□ 1.26
CLRN1P58418 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC22.92■■□□□ 1.26
CLRN1P58418 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
CLRN1P58418 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
CLRN1P58418 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC22.91■■□□□ 1.26
CLRN1P58418 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
CLRN1P58418 EI24-212ENST00000615917 1407 ntTSL 2 BASIC22.91■■□□□ 1.26
CLRN1P58418 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC22.9■■□□□ 1.26
CLRN1P58418 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC22.9■■□□□ 1.26
CLRN1P58418 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC22.89■■□□□ 1.25
CLRN1P58418 CIB2-204ENST00000557846 934 ntTSL 3 BASIC22.89■■□□□ 1.25
CLRN1P58418 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
CLRN1P58418 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC22.88■■□□□ 1.25
CLRN1P58418 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC22.88■■□□□ 1.25
CLRN1P58418 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC22.88■■□□□ 1.25
CLRN1P58418 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
CLRN1P58418 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC22.87■■□□□ 1.25
CLRN1P58418 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
CLRN1P58418 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC22.87■■□□□ 1.25
CLRN1P58418 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC22.86■■□□□ 1.25
CLRN1P58418 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC22.85■■□□□ 1.25
CLRN1P58418 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
CLRN1P58418 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC22.84■■□□□ 1.25
CLRN1P58418 DRD5P2-201ENST00000421395 2012 ntBASIC22.84■■□□□ 1.25
CLRN1P58418 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
CLRN1P58418 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
CLRN1P58418 AC142086.6-201ENST00000621154 1765 ntBASIC22.84■■□□□ 1.25
CLRN1P58418 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC22.83■■□□□ 1.25
CLRN1P58418 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
CLRN1P58418 BOD1-206ENST00000480951 814 ntTSL 2 BASIC22.83■■□□□ 1.25
CLRN1P58418 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC22.83■■□□□ 1.25
CLRN1P58418 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
CLRN1P58418 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms