Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC32.08■■■□□ 2.73
COL4A5P29400 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC32.08■■■□□ 2.73
COL4A5P29400 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC32.06■■■□□ 2.72
COL4A5P29400 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC32.05■■■□□ 2.72
COL4A5P29400 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC32.05■■■□□ 2.72
COL4A5P29400 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC32.05■■■□□ 2.72
COL4A5P29400 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC32.05■■■□□ 2.72
COL4A5P29400 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC32.04■■■□□ 2.72
COL4A5P29400 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC32.04■■■□□ 2.72
COL4A5P29400 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC32.04■■■□□ 2.72
COL4A5P29400 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC32.04■■■□□ 2.72
COL4A5P29400 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC32.03■■■□□ 2.72
COL4A5P29400 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC32.03■■■□□ 2.72
COL4A5P29400 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC32.02■■■□□ 2.72
COL4A5P29400 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC32.02■■■□□ 2.72
COL4A5P29400 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC32.02■■■□□ 2.72
COL4A5P29400 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC32.01■■■□□ 2.72
COL4A5P29400 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC32.01■■■□□ 2.72
COL4A5P29400 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC32.01■■■□□ 2.71
COL4A5P29400 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC32■■■□□ 2.71
COL4A5P29400 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC31.99■■■□□ 2.71
COL4A5P29400 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC31.99■■■□□ 2.71
COL4A5P29400 CEP120-209ENST00000515110 606 ntTSL 3 BASIC31.99■■■□□ 2.71
COL4A5P29400 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC31.98■■■□□ 2.71
COL4A5P29400 NTF6A-201ENST00000591175 560 ntBASIC31.98■■■□□ 2.71
COL4A5P29400 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC31.98■■■□□ 2.71
COL4A5P29400 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC31.97■■■□□ 2.71
COL4A5P29400 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC31.97■■■□□ 2.71
COL4A5P29400 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC31.95■■■□□ 2.7
COL4A5P29400 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC31.95■■■□□ 2.7
COL4A5P29400 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC31.94■■■□□ 2.7
COL4A5P29400 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC31.93■■■□□ 2.7
COL4A5P29400 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC31.93■■■□□ 2.7
COL4A5P29400 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC31.92■■■□□ 2.7
COL4A5P29400 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC31.92■■■□□ 2.7
COL4A5P29400 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC31.92■■■□□ 2.7
COL4A5P29400 AC012354.3-201ENST00000623734 483 ntBASIC31.92■■■□□ 2.7
COL4A5P29400 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
COL4A5P29400 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
COL4A5P29400 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC31.91■■■□□ 2.7
COL4A5P29400 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC31.91■■■□□ 2.7
COL4A5P29400 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
COL4A5P29400 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC31.91■■■□□ 2.7
COL4A5P29400 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC31.9■■■□□ 2.7
COL4A5P29400 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC31.9■■■□□ 2.7
COL4A5P29400 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC31.9■■■□□ 2.7
COL4A5P29400 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC31.89■■■□□ 2.7
COL4A5P29400 AL161658.1-201ENST00000623641 1967 ntBASIC31.89■■■□□ 2.7
COL4A5P29400 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.7
COL4A5P29400 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC31.89■■■□□ 2.7
COL4A5P29400 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC31.89■■■□□ 2.7
COL4A5P29400 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC31.88■■■□□ 2.69
COL4A5P29400 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC31.87■■■□□ 2.69
COL4A5P29400 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC31.86■■■□□ 2.69
COL4A5P29400 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC31.86■■■□□ 2.69
COL4A5P29400 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC31.85■■■□□ 2.69
COL4A5P29400 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC31.85■■■□□ 2.69
COL4A5P29400 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
COL4A5P29400 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
COL4A5P29400 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
COL4A5P29400 AC022413.1-201ENST00000624602 984 ntBASIC31.84■■■□□ 2.69
COL4A5P29400 AC010864.1-201ENST00000609407 1511 ntBASIC31.84■■■□□ 2.69
COL4A5P29400 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC31.83■■■□□ 2.69
COL4A5P29400 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
COL4A5P29400 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC31.82■■■□□ 2.68
COL4A5P29400 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC31.82■■■□□ 2.68
COL4A5P29400 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC31.82■■■□□ 2.68
COL4A5P29400 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC31.82■■■□□ 2.68
COL4A5P29400 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC31.82■■■□□ 2.68
COL4A5P29400 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
COL4A5P29400 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC31.81■■■□□ 2.68
COL4A5P29400 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC31.81■■■□□ 2.68
COL4A5P29400 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC31.8■■■□□ 2.68
COL4A5P29400 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC31.8■■■□□ 2.68
COL4A5P29400 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC31.78■■■□□ 2.68
COL4A5P29400 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC31.78■■■□□ 2.68
COL4A5P29400 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
COL4A5P29400 AC008813.1-201ENST00000536597 885 ntBASIC31.77■■■□□ 2.68
COL4A5P29400 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC31.76■■■□□ 2.68
COL4A5P29400 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC31.76■■■□□ 2.68
COL4A5P29400 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC31.76■■■□□ 2.68
COL4A5P29400 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC31.76■■■□□ 2.68
COL4A5P29400 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC31.76■■■□□ 2.68
COL4A5P29400 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC31.76■■■□□ 2.67
COL4A5P29400 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC31.75■■■□□ 2.67
COL4A5P29400 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC31.75■■■□□ 2.67
COL4A5P29400 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC31.74■■■□□ 2.67
COL4A5P29400 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC31.73■■■□□ 2.67
COL4A5P29400 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
COL4A5P29400 AL033527.3-201ENST00000566366 1196 ntBASIC31.73■■■□□ 2.67
COL4A5P29400 AC018358.1-201ENST00000631079 1402 ntBASIC31.72■■■□□ 2.67
COL4A5P29400 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC31.72■■■□□ 2.67
COL4A5P29400 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
COL4A5P29400 U85056.1-201ENST00000616429 682 ntBASIC31.71■■■□□ 2.67
COL4A5P29400 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC31.7■■■□□ 2.67
COL4A5P29400 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.67
COL4A5P29400 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC31.7■■■□□ 2.67
COL4A5P29400 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC31.7■■■□□ 2.66
COL4A5P29400 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.66
COL4A5P29400 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC31.7■■■□□ 2.66
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms