Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC21.96■■□□□ 1.11
USF1P22415 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
USF1P22415 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC21.95■■□□□ 1.1
USF1P22415 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
USF1P22415 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC21.94■■□□□ 1.1
USF1P22415 ABHD17AP3-201ENST00000503096 1137 ntBASIC21.94■■□□□ 1.1
USF1P22415 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
USF1P22415 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC21.94■■□□□ 1.1
USF1P22415 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
USF1P22415 HES6-205ENST00000409356 528 ntTSL 2 BASIC21.92■■□□□ 1.1
USF1P22415 METRNL-202ENST00000570778 967 ntTSL 5 BASIC21.92■■□□□ 1.1
USF1P22415 BRD4-212ENST00000630599 726 ntTSL 2 BASIC21.92■■□□□ 1.1
USF1P22415 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC21.92■■□□□ 1.1
USF1P22415 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC21.91■■□□□ 1.1
USF1P22415 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC21.91■■□□□ 1.1
USF1P22415 CHML-204ENST00000638121 920 ntTSL 2 BASIC21.91■■□□□ 1.1
USF1P22415 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC21.9■■□□□ 1.1
USF1P22415 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
USF1P22415 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
USF1P22415 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
USF1P22415 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC21.89■■□□□ 1.09
USF1P22415 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
USF1P22415 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC21.89■■□□□ 1.09
USF1P22415 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
USF1P22415 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
USF1P22415 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
USF1P22415 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
USF1P22415 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC21.88■■□□□ 1.09
USF1P22415 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC21.88■■□□□ 1.09
USF1P22415 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
USF1P22415 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC21.86■■□□□ 1.09
USF1P22415 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
USF1P22415 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
USF1P22415 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
USF1P22415 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
USF1P22415 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC21.86■■□□□ 1.09
USF1P22415 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC21.86■■□□□ 1.09
USF1P22415 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC21.85■■□□□ 1.09
USF1P22415 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC21.85■■□□□ 1.09
USF1P22415 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC21.85■■□□□ 1.09
USF1P22415 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
USF1P22415 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
USF1P22415 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC21.84■■□□□ 1.09
USF1P22415 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC21.83■■□□□ 1.09
USF1P22415 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
USF1P22415 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
USF1P22415 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
USF1P22415 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC21.82■■□□□ 1.08
USF1P22415 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC21.82■■□□□ 1.08
USF1P22415 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
USF1P22415 AL161658.1-201ENST00000623641 1967 ntBASIC21.81■■□□□ 1.08
USF1P22415 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC21.81■■□□□ 1.08
USF1P22415 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC21.81■■□□□ 1.08
USF1P22415 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
USF1P22415 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
USF1P22415 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC21.8■■□□□ 1.08
USF1P22415 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
USF1P22415 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC21.8■■□□□ 1.08
USF1P22415 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
USF1P22415 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC21.79■■□□□ 1.08
USF1P22415 CHST11-202ENST00000546689 756 ntTSL 2 BASIC21.79■■□□□ 1.08
USF1P22415 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC21.79■■□□□ 1.08
USF1P22415 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC21.79■■□□□ 1.08
USF1P22415 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
USF1P22415 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
USF1P22415 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC21.78■■□□□ 1.08
USF1P22415 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC21.78■■□□□ 1.08
USF1P22415 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC21.78■■□□□ 1.08
USF1P22415 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
USF1P22415 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
USF1P22415 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC21.77■■□□□ 1.08
USF1P22415 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
USF1P22415 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC21.77■■□□□ 1.08
USF1P22415 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
USF1P22415 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
USF1P22415 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
USF1P22415 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC21.77■■□□□ 1.08
USF1P22415 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
USF1P22415 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
USF1P22415 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC21.77■■□□□ 1.07
USF1P22415 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
USF1P22415 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
USF1P22415 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
USF1P22415 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
USF1P22415 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
USF1P22415 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC21.75■■□□□ 1.07
USF1P22415 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
USF1P22415 LINC00273-201ENST00000539813 1452 ntBASIC21.75■■□□□ 1.07
USF1P22415 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
USF1P22415 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC21.74■■□□□ 1.07
USF1P22415 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC21.74■■□□□ 1.07
USF1P22415 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC21.74■■□□□ 1.07
USF1P22415 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
USF1P22415 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
USF1P22415 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
USF1P22415 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC21.73■■□□□ 1.07
USF1P22415 SRP68-213ENST00000629930 165 ntTSL 5 BASIC21.72■■□□□ 1.07
USF1P22415 AC010864.1-201ENST00000609407 1511 ntBASIC21.71■■□□□ 1.07
USF1P22415 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
USF1P22415 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC21.71■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms